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MK433579.1__QBP27808.1__X__00013

Bact-Vir

MK433579.1__QBP27808.1__X__00013

Identity

Accession:
MK433579 ↗
Kingdom:
phage

Quality

85.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-39
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24732.3 best ParE_like 50.8 1.80e-13 90.9% 49.2%
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.73 58.0 4.37e-01 100.0% 38.0%
1x9mA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.71 56.0 3.45e-01 100.0% 19.9%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 55.0 4.90e-01 100.0% 62.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 50.0 4.67e-01 87.9% 61.7%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.68 50.0 4.55e-01 100.0% 57.7%
7mhuA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.68 56.0 3.21e-01 100.0% 29.5%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.67 51.0 4.58e-01 100.0% 57.4%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 51.0 4.65e-01 100.0% 60.8%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 54.0 4.70e-01 100.0% 57.9%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 51.0 4.30e-01 100.0% 52.9%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 50.0 4.19e-01 100.0% 45.7%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 51.0 3.95e-01 100.0% 41.8%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.65 47.0 4.38e-01 81.8% 58.7%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 51.0 4.61e-01 100.0% 61.5%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 51.0 4.37e-01 100.0% 54.4%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 50.0 4.35e-01 100.0% 98.3%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.63 47.0 4.28e-01 100.0% 61.4%
2egtA01 6.20.50.50 Special › Other non-globular › N-terminal domain of TfIIb › 0.63 43.0 4.33e-01 75.8% 85.2%
3t7lA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 47.0 3.71e-01 84.8% 39.2%
3k1rA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.63 48.0 3.54e-01 97.0% 81.1%
1fblA02 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.62 49.0 3.14e-01 100.0% 31.9%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.62 44.0 3.27e-01 100.0% 25.4%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 3.31e-01 100.0% 27.5%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 46.0 4.09e-01 100.0% 55.2%
2onfA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.61 49.0 3.38e-01 97.0% 29.9%
2pm6A00 1.25.40.1030 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 42.0 2.46e-01 78.8% 7.8%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 46.0 3.44e-01 100.0% 72.1%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 48.0 3.90e-01 100.0% 64.0%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 49.0 3.54e-01 100.0% 34.5%
6yleA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 42.0 2.46e-01 84.8% 8.4%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.60 45.0 4.13e-01 100.0% 60.8%
1rmdA02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.60 42.0 4.25e-01 78.8% 80.0%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.60 48.0 3.30e-01 93.9% 30.7%
3lm2A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 46.0 3.53e-01 100.0% 84.5%
1efpA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 44.0 2.86e-01 87.9% 17.7%
2pm9A02 2.20.25.400 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 41.0 4.20e-01 78.8% 90.0%
2fgeA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.59 45.0 2.79e-01 97.0% 90.8%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.59 43.0 2.95e-01 93.9% 29.0%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.59 46.0 3.46e-01 100.0% 92.0%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 45.0 3.49e-01 97.0% 91.0%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 43.0 3.26e-01 100.0% 36.4%
3fetA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 44.0 2.97e-01 97.0% 21.2%
1s1dA00 2.120.10.100 Mainly Beta › 6 Propeller › Neuraminidase › Apyrase 0.58 42.0 2.51e-01 90.9% 27.8%
7bsbI01 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.57 43.0 3.09e-01 100.0% 86.6%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 40.0 3.69e-01 100.0% 52.5%
3p8aA02 2.60.40.4320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 40.0 3.07e-01 75.8% 27.8%
6yllA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 42.0 3.42e-01 100.0% 81.7%
2im9A02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.56 40.0 2.87e-01 100.0% 24.5%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 41.0 2.69e-01 87.9% 18.5%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.55 43.0 3.25e-01 100.0% 38.6%
2bjfA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.54 43.0 2.58e-01 100.0% 12.9%
5oomK00 3.90.1180.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 0.54 39.0 2.53e-01 81.8% 16.4%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 42.0 3.20e-01 100.0% 39.4%
2v3uA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 38.0 2.71e-01 97.0% 25.2%
1vw4H00 3.90.1180.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 0.52 40.0 2.66e-01 81.8% 20.3%
3d9xA01 6.20.50.100 Special › Other non-globular › N-terminal domain of TfIIb › 0.52 36.0 3.34e-01 72.7% 50.0%
4xr7F02 1.10.287.3700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 40.0 3.04e-01 90.9% 63.3%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3258453 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.83 70.0 5.05e-01 100.0% 34.7%
5072324 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.79 66.0 4.81e-01 100.0% 34.7%
5032233 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 61.0 4.33e-01 100.0% 28.7%
4886650 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.76 59.0 4.55e-01 97.0% 37.6%
5013117 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 62.0 5.11e-01 100.0% 53.8%
4994957 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 61.0 5.34e-01 100.0% 60.0%
4927852 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 60.0 4.53e-01 100.0% 37.8%
3265819 4.1.1.224 beta barrels › SH3 › SH3 › SH3 › Integrase_p58_C 0.72 58.0 4.13e-01 100.0% 29.1%
3713198 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.71 56.0 3.62e-01 100.0% 20.0%
3832128 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 56.0 4.14e-01 100.0% 33.7%
4424609 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.70 56.0 5.04e-01 100.0% 66.0%
3935130 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 58.0 5.03e-01 100.0% 58.2%
4219366 4071.1.1.1 beta barrels › BH3618-like › BH3618-like › BH3618-like › FliW 0.70 57.0 3.92e-01 100.0% 60.2%
3347851 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 56.0 4.53e-01 100.0% 45.7%
3896520 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 55.0 4.74e-01 100.0% 83.3%
3513850 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 55.0 4.11e-01 100.0% 35.8%
None 0.69 52.0 2.82e-01 100.0% 3.6%
4946165 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 53.0 4.78e-01 100.0% 60.0%
5053362 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 48.0 3.15e-01 78.8% 43.2%
3923813 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 53.0 4.42e-01 100.0% 47.7%
3998167 247.1.1.0 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.67 55.0 3.31e-01 100.0% 14.4%
3958960 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.67 51.0 2.99e-01 87.9% 10.2%
3264341 5.1.4.147 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.67 54.0 3.18e-01 100.0% 32.3%
3622846 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 50.0 4.60e-01 100.0% 62.0%
3918767 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 51.0 4.00e-01 100.0% 37.6%
5017214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 51.0 4.62e-01 100.0% 60.0%
2893010 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.65 50.0 4.44e-01 100.0% 57.4%
4966836 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 52.0 4.58e-01 100.0% 87.3%
3492757 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 51.0 4.18e-01 100.0% 51.4%
4883808 148.1.3.202 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › KOW5_SPT5 0.64 49.0 4.42e-01 100.0% 59.6%
4952887 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 47.0 4.32e-01 100.0% 58.2%
3396958 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.63 50.0 3.78e-01 100.0% 81.0%
3226229 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 51.0 4.14e-01 97.0% 47.7%
5079023 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 47.0 4.53e-01 100.0% 73.3%
4992872 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 47.0 4.30e-01 100.0% 61.8%
3598363 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.62 48.0 2.79e-01 100.0% 9.4%
5079728 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.62 48.0 3.09e-01 100.0% 17.4%
3506500 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 49.0 4.61e-01 100.0% 72.1%
3948516 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.62 46.0 4.01e-01 100.0% 87.7%
3789233 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 46.0 4.02e-01 97.0% 49.2%
None 0.62 44.0 2.53e-01 81.8% 8.0%
3181906 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.62 46.0 2.82e-01 87.9% 12.3%
4062751 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.61 48.0 4.18e-01 100.0% 85.0%
4936291 4.1.1.487 beta barrels › SH3 › SH3 › SH3 › DUF7205 0.61 48.0 4.09e-01 100.0% 55.4%
3255146 300.1.1.2 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II 0.61 43.0 3.05e-01 100.0% 27.5%
3959495 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.61 46.0 3.70e-01 90.9% 38.5%
3574733 109.3.1.162 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.60 41.0 2.50e-01 75.8% 9.6%
5032509 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.60 46.0 3.86e-01 97.0% 47.7%
4402956 3675.1.1.0 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.60 43.0 3.03e-01 100.0% 98.8%
4582456 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.60 44.0 3.80e-01 100.0% 78.6%
5017134 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.60 44.0 2.90e-01 100.0% 16.4%
3262203 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 48.0 3.21e-01 100.0% 24.5%
3234947 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 47.0 3.98e-01 100.0% 49.2%
5025079 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.01e-01 100.0% 61.8%
3946649 57.1.1.2 beta complex topology › Cloacin translocation domain › Cloacin translocation domain › Cloacin translocation domain › Pyocin_S 0.59 48.0 3.34e-01 100.0% 39.2%
4475796 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 44.0 4.04e-01 100.0% 92.7%
3265225 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.58 47.0 2.78e-01 100.0% 11.4%
3188199 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 48.0 3.77e-01 100.0% 73.8%
5011841 2005.1.1.10 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.58 42.0 2.88e-01 87.9% 19.3%
3283415 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.58 41.0 3.60e-01 75.8% 41.7%
3493299 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 47.0 3.10e-01 100.0% 79.4%
3247046 377.1.1.83 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF26040 0.58 41.0 4.02e-01 81.8% 67.5%
4978264 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.58 46.0 3.36e-01 100.0% 90.5%
3801752 375.1.1.269 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF29332 0.57 42.0 4.00e-01 100.0% 96.0%
3716928 2008.1.1.107 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.56 45.0 2.89e-01 100.0% 30.7%
4990252 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 41.0 3.40e-01 97.0% 64.9%
3689915 109.4.1.1227 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPHP3_N 0.52 38.0 2.14e-01 100.0% 6.4%
4980247 7515.1.1.2 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.51 36.0 2.09e-01 90.9% 7.7%