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MK448228.1__QBP28199.1__X__00007

Bact-Vir

MK448228.1__QBP28199.1__X__00007

Identity

Accession:
MK448228 ↗
Kingdom:
phage

Quality

96.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klebsiella_phage_ST15-VIM1phi2.1

TaxID: 2555913

Cluster

View cluster (23 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 75-127
PDB
Domain cluster: rep: KP792623.1__AKA60329.1__P26218_26__00026__D102-150
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yueA02 2.10.10.40 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.68 59.0 5.71e-01 100.0% 96.7%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.67 48.0 4.23e-01 90.6% 51.9%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.59 43.0 4.34e-01 98.1% 76.4%
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.58 42.0 4.33e-01 100.0% 84.3%
7r6yA01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.57 47.0 3.98e-01 94.3% 87.0%
1a3wB03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.57 47.0 3.91e-01 94.3% 76.3%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.56 47.0 3.90e-01 94.3% 78.4%
6su1D01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.55 46.0 3.90e-01 94.3% 86.7%
8eq1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.55 45.0 3.89e-01 94.3% 86.4%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.55 45.0 3.80e-01 94.3% 75.5%
1s04A00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.54 46.0 3.72e-01 98.1% 97.3%
1pbyB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 2.65e-01 92.5% 19.9%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 39.0 2.70e-01 88.7% 46.3%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.53 41.0 4.27e-01 96.2% 100.0%
4ixjA02 3.30.1690.20 Alpha Beta › 2-Layer Sandwich › TcpA-like pilin › 0.52 44.0 3.28e-01 100.0% 96.6%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 38.0 3.10e-01 92.5% 39.4%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942382 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.97 92.0 7.98e-01 100.0% 74.7%
3982481 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.95 90.0 8.27e-01 100.0% 83.1%
5069785 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.70 46.0 3.48e-01 92.5% 28.8%
3852582 391.1.1.19 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › FIBL-2 0.64 45.0 4.16e-01 92.5% 57.4%
3498702 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.63 47.0 5.05e-01 96.2% 95.6%
3893051 391.1.1.5 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.62 38.0 4.28e-01 90.6% 88.6%
3322961 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.57 47.0 4.01e-01 94.3% 86.7%
5002640 3761.1.1.1 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.57 44.0 4.49e-01 100.0% 94.0%
4468653 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.56 47.0 3.93e-01 94.3% 77.9%
3231088 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.56 37.0 4.00e-01 92.5% 90.0%
3459983 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 41.0 2.51e-01 100.0% 11.9%
4930861 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 37.0 3.53e-01 86.8% 63.1%
3697433 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.52 41.0 3.01e-01 96.2% 63.6%
4036210 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.51 43.0 2.97e-01 100.0% 28.8%
4347893 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.50 40.0 2.54e-01 94.3% 24.1%
4575341 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.50 41.0 3.10e-01 98.1% 43.5%
D2 medium residues 128-342
PDB
Domain cluster: rep: KM199771.1__AIK68527.1__Lo5R7ANS_57__00057__D358-488_526-544
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21722.5 best Gly_rich_2 49.4 8.50e-13 95.8% 97.8%