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MK448228.1__QBP28251.1__X__00059
Bact-VirMK448228.1__QBP28251.1__X__00059
Identity
- Accession:
- MK448228 ↗
- Kingdom:
- phage
Quality
68.2
mean pLDDT
Taxonomy
TaxID: 2555913
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-83
Domain cluster:
rep: IMGVR_UViG_3300021256_004082-3300021256-Ga0223826_1000019029__D28-87
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.70 | 50.0 | 3.61e-01 | 75.7% | 31.6% |
| 1x49A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.68 | 38.0 | 3.80e-01 | 85.7% | 54.3% |
| 1s0wC01 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.66 | 36.0 | 3.29e-01 | 74.3% | 41.8% |
| 2ra8A01 | 2.20.140.10 | Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain | 0.64 | 42.0 | 4.16e-01 | 100.0% | 63.5% |
| 2kd2A01 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.62 | 33.0 | 3.19e-01 | 78.6% | 41.7% |
| 2yh6D00 | 3.30.530.50 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.62 | 39.0 | 3.39e-01 | 74.3% | 40.0% |
| 4exrA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 34.0 | 3.29e-01 | 85.7% | 46.9% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.59 | 42.0 | 3.55e-01 | 82.9% | 42.0% |
| 2v0uA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 37.0 | 2.95e-01 | 84.3% | 30.8% |
| 3anzC00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.58 | 42.0 | 2.86e-01 | 80.0% | 78.9% |
| 1aq3A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.57 | 42.0 | 3.58e-01 | 84.3% | 45.0% |
| 7xgtA01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.57 | 40.0 | 2.81e-01 | 75.7% | 21.5% |
| 2wb7A02 | 2.60.40.2050 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 39.0 | 3.06e-01 | 72.9% | 62.6% |
| 5ds1A00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 39.0 | 3.64e-01 | 91.4% | 58.7% |
| 2b1xB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 35.0 | 2.69e-01 | 75.7% | 28.1% |
| 4gb5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 36.0 | 2.95e-01 | 71.4% | 34.5% |
| 1s3rA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.53 | 32.0 | 3.67e-01 | 74.3% | 81.1% |
| 1ilvA00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.53 | 43.0 | 3.06e-01 | 95.7% | 54.3% |
| 2obdA02 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.52 | 37.0 | 2.85e-01 | 77.1% | 36.0% |
| 2mdrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 32.0 | 2.99e-01 | 85.7% | 45.7% |
| 4ktpA01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.52 | 44.0 | 3.02e-01 | 94.3% | 63.6% |
| 1h54B01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.51 | 40.0 | 2.83e-01 | 91.4% | 64.7% |
| 3bvxA05 | 2.60.40.1360 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 32.0 | 3.02e-01 | 91.4% | 46.9% |
| 2qikA02 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.51 | 39.0 | 3.00e-01 | 82.9% | 56.1% |
| 1yc9A02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.51 | 35.0 | 3.37e-01 | 74.3% | 69.9% |
| 2np2A00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.50 | 31.0 | 2.70e-01 | 95.7% | 43.1% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3489896 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.72 | 58.0 | 4.14e-01 | 87.1% | 64.5% |
| 3522067 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.71 | 57.0 | 4.16e-01 | 87.1% | 75.5% |
| 3797440 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.68 | 50.0 | 3.60e-01 | 77.1% | 62.1% |
| 3901435 | 11.2.1.57 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF28126 | 0.67 | 54.0 | 4.04e-01 | 88.6% | 72.2% |
| 4946045 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.67 | 58.0 | 5.90e-01 | 98.6% | 98.6% |
| 3729739 | 2008.1.1.143 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 | 0.66 | 57.0 | 3.84e-01 | 100.0% | 26.6% |
| 3718199 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 55.0 | 4.41e-01 | 97.1% | 46.4% |
| 3623409 | 11.1.5.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › T-box | 0.66 | 50.0 | 3.64e-01 | 82.9% | 68.7% |
| 3853340 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.63 | 51.0 | 3.63e-01 | 87.1% | 71.0% |
| 1569515 | 11.1.1.248 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG6 | 0.63 | 49.0 | 4.49e-01 | 82.9% | 70.3% |
| 3537236 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 54.0 | 4.48e-01 | 100.0% | 54.6% |
| 4552467 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.61 | 34.0 | 2.16e-01 | 100.0% | 11.5% |
| 3858437 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.61 | 41.0 | 3.01e-01 | 71.4% | 24.6% |
| 3274927 | 2003.1.5.26 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 | 0.61 | 46.0 | 2.90e-01 | 81.4% | 56.3% |
| 3769918 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.61 | 46.0 | 4.04e-01 | 82.9% | 90.0% |
| 3495218 | 922.1.1.9 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_2 | 0.60 | 38.0 | 4.27e-01 | 72.9% | 90.0% |
| 5070582 | 815.1.1.0 ↗ | a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 | 0.59 | 41.0 | 3.89e-01 | 72.9% | 60.0% |
| 3878685 | 2492.1.1.26 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MPN_2A_DUB_like | 0.58 | 49.0 | 3.68e-01 | 95.7% | 63.8% |
| 4017204 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.58 | 46.0 | 4.22e-01 | 91.4% | 67.0% |
| 3623179 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 37.0 | 3.19e-01 | 74.3% | 36.8% |
| 3896317 | 11.1.1.640 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N | 0.58 | 37.0 | 3.34e-01 | 72.9% | 45.0% |
| 3476563 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 48.0 | 4.13e-01 | 100.0% | 56.7% |
| 4954110 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.58 | 40.0 | 2.77e-01 | 71.4% | 43.6% |
| 4061429 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.57 | 50.0 | 3.17e-01 | 98.6% | 61.6% |
| 3695067 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 48.0 | 2.91e-01 | 100.0% | 14.3% |
| 3513886 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.56 | 43.0 | 3.33e-01 | 87.1% | 72.8% |
| 3389001 | 883.1.1.3 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP | 0.55 | 38.0 | 2.69e-01 | 72.9% | 30.4% |
| 3382839 | 7026.1.1.13 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › Hobbit | 0.54 | 40.0 | 2.34e-01 | 80.0% | 8.9% |
| 3942344 | 2485.3.1.19 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › PF30928 | 0.54 | 40.0 | 2.73e-01 | 82.9% | 88.4% |
| 3587268 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 36.0 | 3.09e-01 | 70.0% | 92.5% |
| 4284384 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.54 | 37.0 | 3.19e-01 | 74.3% | 68.0% |
| 3677000 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.54 | 43.0 | 3.51e-01 | 94.3% | 90.7% |
| 3183651 | 4104.1.1.3 ↗ | beta sandwiches › EscU C-terminal domain-like › EscU C-terminal domain-like › EscU C-terminal domain-like › HECT_2 | 0.53 | 46.0 | 3.83e-01 | 95.7% | 59.2% |
| 3201614 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 38.0 | 3.12e-01 | 77.1% | 70.0% |
| 3601915 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.53 | 41.0 | 2.85e-01 | 87.1% | 61.5% |
| 3517405 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 38.0 | 3.82e-01 | 88.6% | 75.7% |
| 3479384 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 45.0 | 3.22e-01 | 95.7% | 32.9% |
| 3790670 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.53 | 38.0 | 3.13e-01 | 81.4% | 62.0% |
| 3262477 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.52 | 42.0 | 3.46e-01 | 91.4% | 67.1% |
| 3879785 | 11.1.1.640 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N | 0.52 | 37.0 | 3.25e-01 | 75.7% | 62.7% |
| 3607231 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.52 | 40.0 | 2.90e-01 | 90.0% | 53.2% |
| 4068498 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.52 | 43.0 | 4.10e-01 | 95.7% | 76.5% |
| 3924550 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.52 | 40.0 | 3.29e-01 | 91.4% | 90.3% |
| 3957104 | 11.13.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › MspA | 0.51 | 40.0 | 2.93e-01 | 84.3% | 52.6% |
| 3631248 | 220.1.1.20 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH | 0.50 | 43.0 | 3.63e-01 | 100.0% | 56.0% |