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MK448230.1__QBP28279.1__X__00014

Bact-Vir

MK448230.1__QBP28279.1__X__00014

Identity

Accession:
MK448230 ↗
Kingdom:
phage

Quality

89.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klebsiella_phage_ST16-OXA48phi5.2

TaxID: 2555914

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-51
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07026.16 best DUF1317 67.0 1.50e-18 100.0% 73.3%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cshA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.72 50.0 3.97e-01 72.7% 36.7%
1pc6A00 1.10.3790.10 Mainly Alpha › Orthogonal Bundle › NinB fold › NinB 0.68 47.0 3.35e-01 75.0% 61.7%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 49.0 4.06e-01 95.5% 57.1%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.62 47.0 3.52e-01 88.6% 32.2%
3hkoA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.62 47.0 2.96e-01 81.8% 25.2%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 47.0 3.84e-01 93.2% 52.0%
1m61A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 46.0 3.75e-01 93.2% 50.0%
3t0qA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.60 47.0 2.87e-01 88.6% 53.0%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 47.0 3.46e-01 93.2% 36.7%
3sluA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 47.0 3.29e-01 90.9% 35.8%
1nrwA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.56 42.0 3.12e-01 93.2% 61.0%
1i24A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 45.0 2.93e-01 95.5% 89.4%
8a9nA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 44.0 3.20e-01 95.5% 29.8%
4l3rA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.56 37.0 2.57e-01 90.9% 21.7%
1xmtA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 43.0 3.35e-01 86.4% 58.9%
2mnjB00 2.60.40.4160 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 3.27e-01 84.1% 48.9%
4nkbB02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 46.0 3.64e-01 97.7% 83.3%
1ep3A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 44.0 2.58e-01 88.6% 49.2%
2ebnA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 42.0 2.61e-01 97.7% 91.9%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.50 37.0 2.94e-01 86.4% 93.5%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3785134 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.82 43.0 2.68e-01 70.5% 11.3%
3724438 376.1.4.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.74 55.0 4.94e-01 90.9% 56.9%
3526146 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.72 56.0 5.64e-01 88.6% 86.7%
3531683 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.71 56.0 4.58e-01 88.6% 45.9%
3707770 1021.1.1.2 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD 0.68 54.0 4.68e-01 88.6% 55.7%
4474519 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.67 50.0 4.67e-01 86.4% 71.7%
3400447 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 47.0 2.96e-01 75.0% 68.6%
4959769 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.65 43.0 3.36e-01 93.2% 30.5%
3590813 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 45.0 4.39e-01 81.8% 66.0%
3211540 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 52.0 3.92e-01 97.7% 48.3%
3211211 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.64 46.0 3.15e-01 77.3% 55.5%
3593362 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.63 51.0 4.16e-01 90.9% 49.4%
3703190 7.1.1.15 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › DUF7759 0.63 43.0 3.37e-01 72.7% 69.9%
3716634 109.4.1.1357 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2, TPR_16 0.61 48.0 2.97e-01 97.7% 14.9%
3594376 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.61 41.0 3.35e-01 72.7% 75.8%
3697893 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.60 48.0 2.73e-01 97.7% 16.3%
None — 0.60 50.0 3.40e-01 100.0% 55.6%
4948064 375.10.1.6 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › Zn_Ribbon_TF 0.59 45.0 4.34e-01 84.1% 92.0%
4472395 7512.1.1.6 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.58 47.0 2.92e-01 93.2% 53.1%
3738542 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.58 48.0 2.80e-01 97.7% 24.3%
3415555 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 45.0 2.73e-01 86.4% 24.1%
3595893 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 45.0 2.74e-01 97.7% 26.9%
1348267 292.2.1.5 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_3 0.56 46.0 3.64e-01 93.2% 81.3%
5036301 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.55 42.0 4.32e-01 81.8% 97.5%
3709310 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.55 48.0 2.83e-01 100.0% 83.2%
4275625 375.1.1.47 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.55 42.0 3.90e-01 88.6% 81.7%
3704825 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 42.0 2.88e-01 90.9% 84.4%
4263982 375.1.1.302 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MRNIP 0.54 42.0 3.98e-01 88.6% 98.2%
3802019 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.50 44.0 2.81e-01 100.0% 55.3%