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MK448233.1__QBQ71448.1__X__00042

Bact-Vir

MK448233.1__QBQ71448.1__X__00042

Identity

Accession:
MK448233 ↗
Kingdom:
phage

Quality

89.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klebsiella_phage_ST11-VIM1phi8.1

TaxID: 2555910

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 44-157
PDB
Domain cluster: rep: ON470599.1__URC09565.1__X__00032__D48-160
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.71 35.0 3.94e-01 89.5% 59.6%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 34.0 3.51e-01 84.2% 48.2%
3nv0B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 31.0 2.94e-01 86.8% 46.3%
4boeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 45.0 4.02e-01 88.6% 66.9%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.52 31.0 3.50e-01 93.9% 78.3%
1jkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 31.0 2.96e-01 87.7% 48.2%
6eheA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.52 46.0 3.45e-01 100.0% 65.2%
2f1xB00 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.52 40.0 3.78e-01 93.9% 66.9%
2carB00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.52 45.0 3.87e-01 100.0% 90.7%
3fo5B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 43.0 3.43e-01 100.0% 45.5%
2obdA02 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.50 35.0 3.03e-01 71.9% 70.9%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 39.0 3.52e-01 91.2% 59.6%
1eq6A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.50 42.0 3.65e-01 95.6% 61.9%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5063899 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 45.0 3.60e-01 85.1% 37.3%
5079500 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.63 34.0 2.96e-01 93.9% 32.8%
3587340 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 33.0 3.76e-01 71.9% 69.4%
3480143 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.58 51.0 4.66e-01 95.6% 100.0%
3552040 4099.1.1.30 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_C 0.58 53.0 4.89e-01 100.0% 86.9%
3386436 5084.4.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Outer membrane phospholipase A (OMPLA) › Outer membrane phospholipase A (OMPLA) › PLA1 0.58 52.0 4.04e-01 100.0% 83.1%
4500128 5084.8.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.57 47.0 3.15e-01 97.4% 22.7%
3432311 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.56 50.0 4.49e-01 100.0% 98.1%
4986251 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.55 38.0 4.26e-01 71.9% 91.1%
3691478 331.3.1.46 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF7053 0.55 44.0 3.59e-01 86.0% 66.0%
3673068 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.54 43.0 3.53e-01 86.0% 46.5%
3955040 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.54 45.0 3.43e-01 91.2% 90.2%
3251788 9.1.1.37 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF6314 0.54 47.0 4.17e-01 95.6% 83.6%
1293436 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 45.0 4.03e-01 88.6% 67.8%
3924615 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.53 42.0 3.95e-01 89.5% 70.4%
3933483 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.52 40.0 3.78e-01 93.9% 68.1%
3243587 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.52 34.0 2.52e-01 88.6% 23.8%
None — 0.52 46.0 3.90e-01 100.0% 92.3%
3226910 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.52 33.0 2.75e-01 87.7% 33.2%
3603591 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 3.22e-01 100.0% 59.7%
3386242 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.51 36.0 3.46e-01 81.6% 63.0%
4003224 9.1.1.48 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.50 41.0 3.53e-01 91.2% 55.6%
3559265 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.50 39.0 3.66e-01 84.2% 91.0%