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MK448234.1__QBP28527.1__X__00063
Bact-VirMK448234.1__QBP28527.1__X__00063
Identity
- Accession:
- MK448234 ↗
- Kingdom:
- phage
Quality
86.2
mean pLDDT
Taxonomy
TaxID: 2555911
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-206
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02133.22 best | Transp_cyt_pur | 38.0 | 1.30e-09 | 100.0% | 45.7% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7qoaA01 | 1.10.4160.10 | Mainly Alpha › Orthogonal Bundle › Hydantoin permease › Hydantoin permease | 0.85 | 76.0 | 5.98e-01 | 100.0% | 49.0% |
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.60 | 29.0 | 3.63e-01 | 90.8% | 72.3% |
| 4e40A00 | 1.20.1260.80 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.54 | 34.0 | 3.23e-01 | 82.5% | 51.4% |
| 3bhqA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 31.0 | 3.16e-01 | 70.4% | 58.9% |
| 3i9yA00 | 1.20.58.920 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 34.0 | 3.27e-01 | 81.6% | 58.5% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.51 | 29.0 | 3.80e-01 | 85.4% | 100.0% |
| 3hiuD00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.50 | 30.0 | 3.43e-01 | 80.1% | 77.6% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3286989 | 5051.1.1.9 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Transp_cyt_pur | 0.96 | 94.0 | 6.90e-01 | 100.0% | 44.8% |
| 3970878 | 5051.1.1.0 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like | 0.92 | 89.0 | 6.60e-01 | 100.0% | 45.3% |
| 3282974 | 5051.1.1.3 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SSF | 0.84 | 80.0 | 5.70e-01 | 100.0% | 46.6% |
| 5039197 | 5051.1.1.10 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 | 0.82 | 78.0 | 5.88e-01 | 100.0% | 47.4% |
| 4941524 | 5051.1.1.2 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease | 0.81 | 76.0 | 5.94e-01 | 100.0% | 51.1% |
| 4941543 | 5051.1.1.10 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 | 0.80 | 75.0 | 5.85e-01 | 100.0% | 52.1% |
| 5080877 | 5051.1.1.10 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 | 0.80 | 75.0 | 5.64e-01 | 100.0% | 53.1% |
| 3482635 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 33.0 | 2.91e-01 | 98.5% | 37.9% |
| 3214189 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.59 | 28.0 | 3.83e-01 | 83.0% | 87.6% |
| 3964486 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.56 | 27.0 | 3.13e-01 | 81.6% | 60.6% |
| 4676629 | 3755.3.1.290 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PPI_helical | 0.55 | 31.0 | 2.99e-01 | 82.0% | 49.6% |
| 5018995 | 1079.1.1.5 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › DsbD_2 | 0.54 | 37.0 | 3.67e-01 | 100.0% | 64.1% |
| 4136919 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.54 | 27.0 | 2.93e-01 | 82.0% | 54.6% |
| 3734387 | 3758.1.1.0 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins | 0.53 | 43.0 | 3.91e-01 | 84.5% | 88.4% |
| 3794845 | 603.1.1.100 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 | 0.51 | 28.0 | 3.37e-01 | 84.0% | 77.9% |
| 3811877 | 3937.1.1.0 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 | 0.51 | 37.0 | 4.08e-01 | 83.0% | 92.7% |
| 3793999 | 604.1.1.118 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › GOSR1_N | 0.51 | 28.0 | 3.33e-01 | 82.5% | 77.2% |
| 3244448 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.50 | 29.0 | 3.36e-01 | 81.1% | 74.4% |
| 5078221 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.50 | 30.0 | 3.50e-01 | 76.2% | 82.1% |
D2
high
residues 210-314
Domain cluster:
rep: MK416013.1__QBQ71653.1__X__00012__D371-462
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02133.22 best | Transp_cyt_pur | 41.2 | 1.40e-10 | 86.7% | 21.1% |