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MK448235.1__QBQ71520.1__X__00048

Bact-Vir

MK448235.1__QBQ71520.1__X__00048

Identity

Accession:
MK448235 ↗
Kingdom:
phage

Quality

96.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-56
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2greF02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.66 56.0 5.05e-01 100.0% 100.0%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 4.87e-01 90.6% 90.8%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 4.77e-01 90.6% 78.8%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.04e-01 75.5% 86.3%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 55.0 4.47e-01 100.0% 52.9%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 48.0 3.92e-01 86.8% 56.5%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 55.0 5.41e-01 100.0% 98.2%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.62 50.0 4.48e-01 98.1% 100.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 54.0 4.88e-01 100.0% 75.3%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 42.0 4.16e-01 71.7% 77.2%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 41.0 4.11e-01 71.7% 70.2%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 50.0 4.22e-01 100.0% 88.5%
1q90C00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.61 46.0 3.67e-01 88.7% 83.3%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.71e-01 92.5% 98.4%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 4.77e-01 98.1% 88.4%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.02e-01 92.5% 66.7%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 47.0 4.64e-01 88.7% 91.5%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.76e-01 84.9% 100.0%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 4.38e-01 84.9% 76.9%
2xnjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 50.0 4.16e-01 100.0% 100.0%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.60 47.0 4.42e-01 96.2% 83.8%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.52e-01 94.3% 89.4%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.31e-01 98.1% 79.1%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 47.0 3.70e-01 92.5% 75.0%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 3.65e-01 92.5% 45.9%
5hk0B00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.59 52.0 4.16e-01 100.0% 79.4%
5hy7B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 41.0 2.58e-01 75.5% 92.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.10e-01 92.5% 77.1%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 46.0 4.05e-01 96.2% 78.0%
2k0mA00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 45.0 3.74e-01 90.6% 70.2%
2z0qA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 43.0 3.36e-01 84.9% 78.1%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.57 44.0 3.45e-01 90.6% 92.5%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.57 49.0 3.34e-01 100.0% 48.3%
4an6B00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 46.0 3.42e-01 100.0% 97.1%
2mm0A00 2.10.70.110 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.57 45.0 4.31e-01 90.6% 92.2%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 45.0 3.82e-01 100.0% 60.7%
4b6eB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 46.0 3.26e-01 100.0% 56.9%
1sjgA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.56 43.0 3.47e-01 86.8% 87.5%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 45.0 4.03e-01 100.0% 61.2%
1o75A02 2.30.30.470 Mainly Beta › Roll › SH3 type barrels. › Penicillin-binding protein Tp47, domain B 0.56 46.0 3.75e-01 100.0% 84.8%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 45.0 3.24e-01 100.0% 46.8%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 40.0 3.53e-01 83.0% 84.3%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 44.0 3.82e-01 100.0% 63.6%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 40.0 3.50e-01 83.0% 82.4%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.55 43.0 3.54e-01 92.5% 97.2%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.54 38.0 3.74e-01 83.0% 68.4%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 41.0 3.97e-01 90.6% 98.4%
2m4vA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.53 37.0 3.34e-01 81.1% 51.2%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 37.0 2.43e-01 77.4% 26.1%
3vgfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 35.0 3.10e-01 71.7% 70.6%
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.52 36.0 2.73e-01 75.5% 36.2%
1uvgA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.52 43.0 4.24e-01 96.2% 98.3%
5fmgG00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 35.0 2.44e-01 73.6% 31.1%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.51 35.0 2.09e-01 77.4% 7.8%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.50 39.0 4.02e-01 100.0% 100.0%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 38.0 3.30e-01 90.6% 100.0%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3315166 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.72 58.0 4.86e-01 88.7% 65.6%
3923767 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.70 59.0 5.03e-01 98.1% 90.0%
3934628 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 61.0 5.12e-01 100.0% 62.2%
3913687 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 55.0 4.62e-01 88.7% 54.4%
3514191 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 60.0 4.89e-01 100.0% 56.0%
3508415 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 55.0 4.15e-01 90.6% 39.2%
3354387 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.68 54.0 4.65e-01 88.7% 87.1%
4930010 1.1.7.141 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MazE_antitoxin 0.68 56.0 4.81e-01 100.0% 82.1%
4023481 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 55.0 4.09e-01 100.0% 87.5%
3854864 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 55.0 4.47e-01 100.0% 49.0%
5007131 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.67 56.0 4.74e-01 100.0% 96.8%
3229356 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 52.0 4.22e-01 88.7% 68.6%
3768742 4.1.1.355 beta barrels › SH3 › SH3 › SH3 › WAC_Acf1_DNA_bd 0.65 53.0 3.39e-01 90.6% 23.5%
3582876 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.65 53.0 4.26e-01 90.6% 59.0%
3920026 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.65 51.0 3.47e-01 88.7% 26.7%
3691144 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 52.0 4.79e-01 90.6% 95.7%
4580772 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 56.0 4.86e-01 100.0% 64.7%
3222570 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 49.0 3.87e-01 84.9% 79.1%
3407855 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 57.0 4.77e-01 100.0% 61.1%
3562168 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 56.0 4.73e-01 100.0% 60.0%
3408327 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 56.0 4.71e-01 100.0% 61.1%
3723834 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 51.0 4.72e-01 90.6% 95.7%
2127246 4.8.1.4 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MBT 0.64 52.0 4.81e-01 92.5% 91.3%
3586487 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 51.0 4.40e-01 90.6% 60.0%
3552831 1.1.7.41 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.63 51.0 4.32e-01 100.0% 96.2%
3409299 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.63 49.0 4.36e-01 88.7% 65.0%
3533770 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.63 51.0 4.17e-01 92.5% 54.3%
3476478 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 50.0 4.14e-01 88.7% 52.6%
3850775 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.63 50.0 4.76e-01 90.6% 80.0%
3226615 4.1.1.389 beta barrels › SH3 › SH3 › SH3 › PF30352 0.62 53.0 4.47e-01 100.0% 67.4%
3768116 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.62 54.0 3.64e-01 100.0% 30.2%
4055256 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 54.0 4.58e-01 100.0% 60.0%
3839016 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 52.0 4.98e-01 100.0% 96.9%
4058174 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 53.0 4.99e-01 100.0% 92.3%
1263713 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.62 49.0 4.96e-01 88.7% 96.2%
4026282 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 54.0 4.57e-01 100.0% 61.1%
5081809 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 49.0 4.66e-01 92.5% 98.5%
4034317 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.74e-01 92.5% 98.4%
2727964 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.62 49.0 4.79e-01 90.6% 93.2%
3625817 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.61 51.0 4.61e-01 100.0% 83.7%
3407089 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 53.0 4.70e-01 100.0% 68.8%
3970821 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 50.0 4.17e-01 100.0% 83.8%
3309829 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 50.0 3.68e-01 98.1% 66.3%
5075955 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 50.0 4.35e-01 100.0% 95.5%
3684460 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.60 52.0 4.32e-01 100.0% 92.6%
396031 4.22.1.1 beta barrels › SH3 › Hypothetical protein ORF131 › Hypothetical protein ORF131 › PSV_ORF131-like_dom 0.59 46.0 3.94e-01 94.3% 70.3%
3366414 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.59 47.0 3.89e-01 100.0% 77.4%
3253267 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.31e-01 100.0% 84.7%
3879653 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.57 46.0 4.26e-01 92.5% 87.1%
3651307 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.57 46.0 3.76e-01 98.1% 75.7%
3839094 234.3.1.6 a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain › DUF3519, PBECR3 0.57 41.0 2.93e-01 81.1% 32.2%
3939634 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.57 39.0 3.17e-01 73.6% 85.2%
2716345 1.4.1.1 beta barrels › cradle loop barrel › N-terminal domain of poxin › N-terminal domain of poxin › Baculo_p26 0.56 45.0 3.39e-01 100.0% 73.6%
3386201 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.56 44.0 3.18e-01 90.6% 61.2%
3987900 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 3.86e-01 92.5% 76.7%
3287098 317.1.1.6 a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › RamC_N 0.55 41.0 2.98e-01 86.8% 59.4%
4027502 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 42.0 4.02e-01 90.6% 95.4%
3972307 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 43.0 4.20e-01 96.2% 86.7%
3970893 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 42.0 4.14e-01 96.2% 88.3%
3284762 4090.1.1.0 a+b two layers › BH3703-like › BH3703-like › BH3703-like 0.52 36.0 2.80e-01 75.5% 69.0%
3864286 922.1.1.7 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_ADAMTS 0.51 40.0 3.74e-01 84.9% 78.5%
3442219 2003.1.2.17 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase 0.51 37.0 2.28e-01 83.0% 60.5%
3959955 304.163.1.3 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 0.51 36.0 3.83e-01 81.1% 91.1%