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MK448237.1__QBP28641.1__X__00058

Bact-Vir

MK448237.1__QBP28641.1__X__00058

Identity

Accession:
MK448237 ↗
Kingdom:
phage

Quality

82.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-50
PDB
Domain cluster: representative
CATH (72)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 61.0 5.65e-01 90.0% 100.0%
2qlzA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 57.0 5.32e-01 88.0% 96.8%
2oi8A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.70 58.0 3.91e-01 96.0% 29.1%
3k69A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 57.0 4.12e-01 94.0% 33.3%
5k7fA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 49.0 5.12e-01 76.0% 100.0%
6s6hA01 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.70 51.0 4.04e-01 80.0% 36.7%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 55.0 5.41e-01 90.0% 88.9%
2hyjA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 49.0 5.10e-01 78.0% 97.8%
1xd7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 4.27e-01 92.0% 51.7%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 5.00e-01 90.0% 79.1%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 5.27e-01 88.0% 85.5%
2raeA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 50.0 5.18e-01 80.0% 100.0%
6sdkA01 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.68 51.0 4.18e-01 82.0% 42.3%
5exvC00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.68 50.0 3.56e-01 82.0% 69.7%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.68 54.0 4.34e-01 94.0% 100.0%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 55.0 5.13e-01 96.0% 73.1%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 53.0 4.82e-01 92.0% 83.3%
1b0nA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 46.0 3.68e-01 76.0% 35.0%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 5.15e-01 86.0% 100.0%
3b81A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.67 54.0 3.76e-01 96.0% 55.2%
3oceA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.66 49.0 4.85e-01 82.0% 76.4%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.66 51.0 3.34e-01 92.0% 19.1%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 4.72e-01 90.0% 66.7%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 4.79e-01 88.0% 73.4%
3vuqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 52.0 3.76e-01 98.0% 63.1%
4nvsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.65 46.0 3.35e-01 78.0% 53.5%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 4.82e-01 86.0% 92.9%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 47.0 4.90e-01 94.0% 88.9%
3mvpA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 48.0 4.90e-01 84.0% 100.0%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 4.36e-01 88.0% 55.0%
1rm6D04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.65 53.0 3.52e-01 98.0% 90.3%
4ybaA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 45.0 4.03e-01 78.0% 49.4%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 49.0 3.37e-01 90.0% 26.2%
2fd5A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 47.0 4.74e-01 84.0% 95.8%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 53.0 4.31e-01 100.0% 55.8%
4mloA02 1.10.10.1310 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ToxT, HTH1 motif 0.63 48.0 4.88e-01 86.0% 93.6%
3lsgA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 50.0 4.94e-01 94.0% 98.2%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 4.60e-01 90.0% 76.2%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 51.0 4.20e-01 98.0% 53.4%
6f8hC00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 43.0 3.67e-01 74.0% 39.8%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 48.0 4.71e-01 88.0% 100.0%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 46.0 4.23e-01 84.0% 64.3%
3f2gA00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 49.0 3.37e-01 94.0% 36.6%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.47e-01 86.0% 72.1%
7vjmB01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 44.0 4.12e-01 78.0% 59.4%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.33e-01 90.0% 75.0%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 43.0 3.96e-01 78.0% 53.5%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 44.0 3.77e-01 78.0% 45.9%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 42.0 3.97e-01 74.0% 57.1%
3e7lA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 48.0 4.65e-01 92.0% 80.0%
1zk8A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 45.0 4.58e-01 86.0% 100.0%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 44.0 4.47e-01 88.0% 82.4%
7u32G01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.61 43.0 4.23e-01 80.0% 69.6%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 4.05e-01 88.0% 58.7%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.60 50.0 3.74e-01 100.0% 79.6%
1in4A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.36e-01 96.0% 83.6%
3f51C00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 42.0 3.65e-01 78.0% 42.2%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.60 45.0 3.41e-01 88.0% 33.3%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 48.0 4.67e-01 98.0% 98.2%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 3.73e-01 88.0% 44.8%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.32e-01 88.0% 75.0%
2de2A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 43.0 2.99e-01 86.0% 72.7%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 44.0 4.39e-01 92.0% 92.7%
4ghjB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 39.0 3.52e-01 74.0% 47.4%
2iaiA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 44.0 4.20e-01 96.0% 75.4%
3u3wA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 38.0 3.58e-01 78.0% 53.6%
8dtqA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 39.0 3.49e-01 76.0% 46.3%
2mqkA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 39.0 3.76e-01 80.0% 61.5%
5zl6A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.55 42.0 3.07e-01 86.0% 56.3%
2bnmA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 38.0 3.53e-01 78.0% 52.7%
2k9qA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 35.0 3.69e-01 74.0% 87.5%
3kw3B01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.51 39.0 2.90e-01 90.0% 57.8%
ECOD (91)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5059633 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.73 56.0 5.52e-01 86.0% 78.2%
3587618 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.72 52.0 4.38e-01 78.0% 45.9%
5039289 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.71 52.0 4.65e-01 82.0% 58.7%
4927516 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 55.0 5.24e-01 90.0% 73.3%
3920267 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 56.0 4.91e-01 94.0% 81.2%
3954433 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.69 51.0 5.33e-01 94.0% 93.3%
4595970 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 55.0 5.27e-01 96.0% 75.0%
5009652 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.69 51.0 4.74e-01 82.0% 67.7%
3278040 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 51.0 4.92e-01 96.0% 71.7%
1738401 101.1.1.14 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_Zn 0.66 47.0 4.96e-01 80.0% 92.7%
3976869 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 47.0 4.49e-01 78.0% 65.0%
4293871 101.1.1.62 alpha arrays › HTH › HTH › Three-helical HTH › HTH_24 0.66 47.0 4.65e-01 84.0% 72.7%
5078377 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 52.0 5.21e-01 90.0% 94.0%
3953011 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.66 49.0 4.80e-01 94.0% 76.4%
5050597 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.66 54.0 5.26e-01 92.0% 90.9%
5077769 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.66 54.0 5.48e-01 98.0% 96.0%
4861506 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.66 52.0 5.05e-01 94.0% 96.6%
4992594 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 50.0 5.15e-01 86.0% 95.6%
4947464 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.65 48.0 4.76e-01 88.0% 76.4%
3389609 101.1.1.35 alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.65 53.0 4.93e-01 100.0% 72.9%
5046682 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.65 53.0 4.79e-01 94.0% 72.9%
5050152 101.1.3.35 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Terminase_5 0.64 51.0 5.19e-01 98.0% 94.0%
4963941 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.64 53.0 4.79e-01 94.0% 72.9%
5038629 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.64 50.0 5.07e-01 92.0% 94.0%
3338097 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 47.0 4.66e-01 84.0% 89.1%
3983783 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.64 54.0 4.43e-01 98.0% 57.9%
3288492 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.64 45.0 4.62e-01 82.0% 84.4%
4590594 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.64 45.0 4.82e-01 78.0% 97.5%
3944389 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.64 51.0 4.44e-01 96.0% 64.7%
4962234 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.63 50.0 4.50e-01 92.0% 68.0%
3586944 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.63 49.0 4.22e-01 92.0% 63.3%
4158455 101.1.2.464 alpha arrays › HTH › HTH › winged helix domain › HTH_AraC 0.63 45.0 4.62e-01 78.0% 86.7%
3432588 101.1.3.12 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › PF26138 0.63 51.0 4.31e-01 98.0% 54.8%
5007486 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.63 51.0 4.55e-01 94.0% 68.0%
5052144 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 48.0 4.78e-01 90.0% 85.5%
4944760 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 46.0 4.40e-01 86.0% 66.7%
4612964 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.63 45.0 4.62e-01 80.0% 97.8%
4863786 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.62 50.0 4.96e-01 96.0% 92.7%
1095020 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.62 46.0 4.23e-01 84.0% 64.3%
3877765 101.1.1.35 alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.62 45.0 4.77e-01 88.0% 100.0%
4978931 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.62 44.0 4.03e-01 80.0% 55.7%
3974513 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 46.0 4.76e-01 94.0% 95.6%
4965159 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.62 50.0 4.57e-01 94.0% 72.9%
3706139 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 48.0 4.81e-01 90.0% 92.0%
5018477 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 48.0 4.46e-01 92.0% 70.0%
4334657 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.62 44.0 4.56e-01 94.0% 91.1%
4198219 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 44.0 4.55e-01 94.0% 91.1%
4480726 101.1.1.300 alpha arrays › HTH › HTH › Three-helical HTH › HTH_30 0.62 45.0 4.59e-01 90.0% 82.0%
4501735 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 46.0 4.12e-01 84.0% 58.7%
3279219 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 48.0 4.79e-01 96.0% 100.0%
3956306 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.61 47.0 4.63e-01 88.0% 83.6%
3946248 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.61 49.0 4.12e-01 98.0% 55.0%
4970998 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.61 47.0 3.86e-01 94.0% 44.0%
4169333 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.61 48.0 3.69e-01 96.0% 36.8%
4456463 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.61 48.0 3.67e-01 92.0% 46.2%
3971281 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.61 46.0 4.57e-01 88.0% 80.0%
3970408 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.60 44.0 4.27e-01 84.0% 75.0%
4460997 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.60 44.0 4.55e-01 86.0% 93.3%
149489 101.1.1.95 alpha arrays › HTH › HTH › Three-helical HTH › PhyR_sigma-like 0.60 45.0 4.01e-01 88.0% 58.7%
3941568 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 45.0 4.50e-01 92.0% 100.0%
5013438 101.1.2.881 alpha arrays › HTH › HTH › winged helix domain › UPF0175 0.60 48.0 4.56e-01 98.0% 75.0%
4642479 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.60 46.0 3.93e-01 92.0% 55.8%
4162857 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.59 44.0 4.45e-01 96.0% 88.0%
4133358 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 46.0 3.40e-01 92.0% 30.3%
3955106 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.59 46.0 3.95e-01 92.0% 52.2%
4966252 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.59 39.0 4.28e-01 70.0% 97.1%
3590753 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 44.0 4.44e-01 96.0% 88.0%
3376425 101.1.1.267 alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.59 46.0 4.08e-01 96.0% 60.0%
4282037 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.59 47.0 4.07e-01 98.0% 60.0%
3946233 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 46.0 4.53e-01 94.0% 96.4%
4944661 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 45.0 4.47e-01 96.0% 85.5%
3984815 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.59 49.0 4.81e-01 100.0% 100.0%
3800176 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 48.0 4.13e-01 98.0% 62.4%
3986553 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.58 46.0 3.86e-01 100.0% 49.0%
4007629 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.58 43.0 3.98e-01 94.0% 61.4%
4929297 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.58 38.0 3.54e-01 74.0% 50.0%
3961692 101.1.1.300 alpha arrays › HTH › HTH › Three-helical HTH › HTH_30 0.58 44.0 3.77e-01 92.0% 51.6%
3280686 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.57 44.0 3.70e-01 92.0% 54.0%
3562851 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.57 43.0 3.32e-01 94.0% 31.7%
5014241 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.57 42.0 3.68e-01 84.0% 50.6%
3793383 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.57 47.0 4.42e-01 98.0% 76.9%
3333780 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.57 45.0 3.44e-01 96.0% 35.0%
4147763 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.57 41.0 3.73e-01 76.0% 54.3%
4929133 101.1.1.251 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ParB 0.56 42.0 4.29e-01 96.0% 90.0%
5070906 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 44.0 4.24e-01 94.0% 76.7%
4945289 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 44.0 4.28e-01 96.0% 78.3%
5040806 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.56 40.0 3.49e-01 80.0% 50.6%
3973615 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.56 41.0 3.90e-01 86.0% 63.1%
5051680 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.54 47.0 4.05e-01 100.0% 100.0%
3306298 101.1.4.53 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › PF29035 0.54 38.0 3.65e-01 78.0% 63.3%
4654073 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.53 41.0 3.73e-01 94.0% 68.0%
D2 medium residues 76-151
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03592.22 best Terminase_2 95.2 8.20e-27 100.0% 50.3%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cmpA00 1.10.10.1400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Terminase, small subunit, N-terminal DNA-binding domain, HTH motif 0.99 69.0 8.07e-01 71.1% 98.2%
2oauA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 41.0 3.72e-01 77.6% 44.1%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 4.60e-01 77.6% 72.5%
3aqbB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.63 53.0 3.47e-01 93.4% 47.0%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.62 50.0 4.58e-01 88.2% 72.7%
7pbkA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 46.0 3.23e-01 89.5% 26.6%
2f1kC02 1.10.3660.10 Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain 0.61 50.0 4.40e-01 89.5% 77.9%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 4.28e-01 78.9% 74.7%
1r4wA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 41.0 3.05e-01 72.4% 76.9%
3kkdA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 52.0 3.86e-01 97.4% 37.9%
5y9sC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.40e-01 81.6% 97.6%
6dewA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 50.0 3.76e-01 96.1% 41.1%
4mndA02 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.58 48.0 3.61e-01 90.8% 42.9%
4x0qA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.58 44.0 3.66e-01 84.2% 72.2%
5k3hB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 43.0 3.53e-01 85.5% 45.1%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.50e-01 93.4% 57.6%
4bqnA02 1.10.10.2490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 35.0 3.11e-01 72.4% 79.4%
7eu3E01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 42.0 4.01e-01 88.2% 93.1%
4fx0A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.43e-01 85.5% 70.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1834406 101.1.3.2 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Terminase_2 0.95 66.0 7.64e-01 71.1% 98.2%
3976103 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.66 48.0 5.12e-01 77.6% 92.3%
4297810 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.64 45.0 4.29e-01 73.7% 72.2%
3609611 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.64 51.0 4.16e-01 85.5% 51.1%
3212897 198.1.1.1 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.63 44.0 4.42e-01 72.4% 80.0%
4664006 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.63 49.0 4.68e-01 84.2% 91.1%
3619451 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 39.0 4.15e-01 71.1% 75.4%
4848450 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.60 46.0 3.84e-01 84.2% 59.0%
3736609 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.58 51.0 3.05e-01 97.4% 77.1%
4168957 1197.1.1.1 alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf 0.58 42.0 3.12e-01 76.3% 32.3%
5011873 4156.1.1.6 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc 0.57 40.0 3.21e-01 75.0% 76.4%
3939120 180.1.1.1 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.57 48.0 3.87e-01 98.7% 76.9%
3681791 141.1.1.4 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_synth_C 0.57 47.0 3.17e-01 92.1% 41.7%
4501827 3843.1.1.1 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 0.56 44.0 3.99e-01 85.5% 74.3%
4456347 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.54 43.0 3.95e-01 86.8% 78.0%
3497163 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.51 35.0 3.46e-01 78.9% 66.3%