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MK448323.1__QBX07173.1__JavanS120_0023__00003

Bact-Vir

MK448323.1__QBX07173.1__JavanS120_0023__00003

Identity

Accession:
MK448323 ↗
Kingdom:
phage

Quality

95.9 mean pLDDT

Taxonomy

TaxID: 2558530

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-160
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04073.21 best tRNA_edit 86.6 2.10e-24 90.2% 81.3%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vjfA00 3.90.960.10 Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain 0.95 92.0 8.05e-01 100.0% 72.9%
2z0xA00 3.90.960.10 Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain 0.87 76.0 6.90e-01 100.0% 71.3%
1dbuA00 3.90.960.10 Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain 0.86 78.0 7.12e-01 100.0% 76.3%
1wdvA00 3.90.960.10 Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain 0.85 75.0 6.95e-01 100.0% 75.3%
2j3lA03 3.90.960.10 Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain 0.85 74.0 6.85e-01 100.0% 75.5%
3op6A00 3.90.960.10 Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain 0.83 73.0 6.86e-01 100.0% 77.4%
3memA01 3.90.960.10 Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain 0.83 73.0 6.89e-01 100.0% 79.6%
2pd2A00 3.40.1260.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like 0.64 36.0 3.80e-01 86.9% 62.0%
3lklA00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.59 40.0 4.49e-01 97.5% 90.3%
5utkA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 28.0 3.32e-01 78.7% 65.1%
3bjrA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 44.0 3.63e-01 94.3% 67.2%
1ukcB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 42.0 2.88e-01 91.8% 66.9%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3969678 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.97 94.0 8.40e-01 100.0% 76.2%
4257815 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.96 94.0 8.36e-01 100.0% 77.4%
4028261 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.96 93.0 8.17e-01 100.0% 73.9%
2099779 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.95 91.0 7.97e-01 100.0% 72.5%
3592207 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.95 91.0 8.06e-01 100.0% 74.5%
5048810 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.95 91.0 8.15e-01 100.0% 76.2%
3594683 299.1.1.0 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain 0.94 91.0 7.82e-01 100.0% 70.3%
3354546 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.92 89.0 7.84e-01 100.0% 74.5%
4851946 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.92 88.0 7.91e-01 100.0% 77.4%
3743440 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.91 87.0 7.63e-01 100.0% 74.7%
3964648 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.91 81.0 7.35e-01 100.0% 73.4%
3588001 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.90 82.0 7.44e-01 100.0% 74.8%
5057908 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.90 79.0 7.21e-01 100.0% 72.3%
5058227 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.89 80.0 7.32e-01 100.0% 75.3%
4999044 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.89 78.0 7.08e-01 100.0% 72.1%
5058424 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.89 78.0 7.12e-01 100.0% 72.3%
3285957 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.89 79.0 7.19e-01 100.0% 73.4%
4998768 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.88 78.0 7.27e-01 99.2% 77.2%
4936981 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.88 77.0 7.09e-01 100.0% 73.5%
3589616 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.88 81.0 7.38e-01 100.0% 76.0%
4983798 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.88 78.0 7.15e-01 100.0% 74.5%
4030991 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.87 78.0 7.10e-01 100.0% 73.5%
4962514 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.87 78.0 7.08e-01 100.0% 72.8%
3781034 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.87 83.0 7.61e-01 100.0% 85.3%
4991814 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.87 77.0 7.29e-01 100.0% 80.7%
3291159 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.87 76.0 6.96e-01 100.0% 73.2%
4004721 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.87 80.0 7.21e-01 100.0% 73.8%
3969250 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.87 76.0 7.00e-01 100.0% 74.7%
432593 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.86 75.0 6.85e-01 100.0% 71.3%
4580010 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.86 76.0 7.28e-01 100.0% 83.0%
5039425 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.86 78.0 7.08e-01 100.0% 74.1%
3506158 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.86 77.0 6.97e-01 100.0% 73.0%
7515 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.85 75.0 6.95e-01 100.0% 75.3%
3284797 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.85 79.0 7.15e-01 100.0% 76.1%
4532380 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.85 69.0 6.81e-01 100.0% 80.0%
3589678 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.85 74.0 6.90e-01 100.0% 76.6%
5010845 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.85 74.0 6.92e-01 100.0% 77.1%
5057917 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.85 80.0 7.06e-01 100.0% 77.1%
4137434 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.85 73.0 6.82e-01 100.0% 75.9%
4666679 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.85 73.0 6.83e-01 100.0% 75.9%
4347677 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.84 73.0 6.81e-01 100.0% 75.9%
3987589 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.84 77.0 7.09e-01 100.0% 78.0%
4490074 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.84 73.0 7.12e-01 100.0% 84.6%
5040451 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.84 76.0 6.91e-01 100.0% 74.7%
4371565 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.84 72.0 6.71e-01 100.0% 75.2%
4261348 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.84 75.0 7.13e-01 100.0% 82.1%
4072170 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.84 72.0 6.76e-01 100.0% 75.9%
3957325 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.84 73.0 6.82e-01 100.0% 76.6%
140656 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.83 73.0 6.85e-01 100.0% 76.9%
3174891 299.1.1.0 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain 0.83 79.0 7.38e-01 100.0% 87.6%
4122356 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.83 73.0 7.08e-01 100.0% 83.7%
4103294 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.83 78.0 6.61e-01 100.0% 95.3%
139245 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.83 73.0 6.87e-01 100.0% 79.0%
3973747 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.83 73.0 6.93e-01 100.0% 80.7%
3969194 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.82 78.0 6.79e-01 100.0% 96.6%
5028983 299.1.1.0 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain 0.82 77.0 6.53e-01 100.0% 76.6%
3704928 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.81 76.0 6.76e-01 100.0% 73.8%
4600936 299.1.1.0 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain 0.81 72.0 6.93e-01 100.0% 84.4%
4202856 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.80 76.0 6.74e-01 100.0% 97.0%
4178120 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.80 76.0 7.02e-01 100.0% 94.7%
4385357 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.80 76.0 7.30e-01 100.0% 99.3%
4556330 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.79 75.0 6.75e-01 100.0% 97.5%
4240799 299.1.1.0 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain 0.79 74.0 6.80e-01 100.0% 87.7%
4640512 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.79 74.0 6.95e-01 100.0% 97.2%
4351161 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.78 73.0 6.35e-01 100.0% 88.3%
4664972 299.1.1.0 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain 0.78 73.0 6.77e-01 100.0% 94.0%
4301405 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.77 72.0 6.39e-01 100.0% 88.2%
3840114 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.77 72.0 6.77e-01 100.0% 83.4%
4229014 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.77 73.0 6.83e-01 100.0% 92.4%
4072161 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.76 71.0 6.40e-01 100.0% 75.6%
4446778 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.76 71.0 6.79e-01 100.0% 94.3%
4680539 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.75 71.0 6.78e-01 100.0% 94.3%
4049320 299.1.1.0 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain 0.74 68.0 6.18e-01 99.2% 83.7%
3177556 314.1.1.2 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.67 53.0 3.57e-01 98.4% 23.2%
4872424 7545.1.1.0 a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like 0.64 36.0 3.83e-01 86.9% 62.0%
165764 7545.1.1.1 a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.64 36.0 3.80e-01 86.9% 62.0%
3963010 2496.1.1.2 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS 0.60 41.0 4.47e-01 100.0% 84.0%
4945157 7545.1.1.0 a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like 0.59 38.0 3.91e-01 86.9% 66.7%
4991181 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.56 26.0 3.44e-01 98.4% 80.0%
3685469 299.1.1.0 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain 0.54 47.0 4.60e-01 99.2% 86.7%