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MK448334.1__QBX07440.1__JavanS147_0002__00002
Bact-VirMK448334.1__QBX07440.1__JavanS147_0002__00002
Identity
- Accession:
- MK448334 ↗
- Kingdom:
- phage
Quality
72.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-59
Domain cluster:
rep: MK448522.1__QBX10995.1__JavanS519_0024__00002__D4-68
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12844.14 best | HTH_19 | 35.6 | 9.90e-09 | 100.0% | 89.1% |
| PF13443.13 | HTH_26 | 28.3 | 2.40e-06 | 100.0% | 88.9% |
| PF01381.29 | HTH_3 | 62.5 | 4.10e-17 | 96.5% | 100.0% |
D2
high
residues 185-270
D3
medium
residues 68-179
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.72 | 37.0 | 4.85e-01 | 71.4% | 93.3% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.70 | 45.0 | 5.50e-01 | 71.4% | 94.8% |
| 3uo2B02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.69 | 45.0 | 5.22e-01 | 94.6% | 89.3% |
| 5ux2B01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.67 | 55.0 | 4.43e-01 | 87.5% | 62.6% |
| 2rbdA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.64 | 55.0 | 4.96e-01 | 91.1% | 89.3% |
| 3ez0C00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.63 | 53.0 | 4.30e-01 | 91.1% | 64.4% |
| 4lixA03 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.61 | 46.0 | 3.67e-01 | 80.4% | 46.6% |
| 3m9vA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.61 | 44.0 | 3.92e-01 | 74.1% | 93.6% |
| 3q2qA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.60 | 46.0 | 3.38e-01 | 81.2% | 35.4% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 37.0 | 4.41e-01 | 83.9% | 94.5% |
| 8hk0B03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.59 | 42.0 | 3.94e-01 | 73.2% | 96.4% |
| 1x04A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.59 | 41.0 | 3.30e-01 | 71.4% | 40.0% |
| 4nswB01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.57 | 44.0 | 3.32e-01 | 81.2% | 52.0% |
| 2yinA03 | 1.20.58.740 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C | 0.56 | 42.0 | 4.07e-01 | 78.6% | 97.7% |
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 38.0 | 2.96e-01 | 70.5% | 55.5% |
| 4p3gD00 | 1.10.3450.40 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › Signal recognition particle, SRP68 subunit, RNA-binding domain | 0.56 | 49.0 | 4.12e-01 | 98.2% | 85.1% |
| 3nvoB02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.54 | 46.0 | 4.59e-01 | 88.4% | 87.1% |
| 3l1nA02 | 1.20.1280.140 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.54 | 40.0 | 4.41e-01 | 92.0% | 100.0% |
| 3uumA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 45.0 | 4.37e-01 | 91.1% | 83.6% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4405928 | 5086.1.1.196 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_YknX | 0.92 | 46.0 | 5.89e-01 | 71.4% | 80.0% |
| 3855328 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.88 | 44.0 | 4.82e-01 | 71.4% | 58.9% |
| 4984327 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.88 | 44.0 | 4.57e-01 | 71.4% | 53.3% |
| 4039014 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.83 | 43.0 | 4.34e-01 | 70.5% | 51.8% |
| 3286299 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.83 | 42.0 | 4.33e-01 | 70.5% | 51.8% |
| 4671 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.81 | 43.0 | 4.36e-01 | 72.3% | 52.7% |
| 3638386 | 603.1.1.111 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › TBCC_N | 0.79 | 42.0 | 4.35e-01 | 71.4% | 55.2% |
| 4015513 | 610.4.1.1 ↗ | alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY | 0.79 | 58.0 | 5.18e-01 | 75.0% | 68.0% |
| 3724573 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.77 | 53.0 | 4.84e-01 | 70.5% | 89.7% |
| 5071229 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.71 | 45.0 | 4.66e-01 | 76.8% | 67.6% |
| 3621305 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.71 | 49.0 | 4.40e-01 | 70.5% | 79.3% |
| 4942772 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.70 | 38.0 | 4.74e-01 | 71.4% | 90.8% |
| 5082862 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.69 | 60.0 | 5.15e-01 | 91.1% | 89.1% |
| 4980482 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.65 | 47.0 | 4.48e-01 | 74.1% | 98.5% |
| 3729754 | 159.1.2.18 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › CLPTM1 | 0.63 | 37.0 | 4.15e-01 | 72.3% | 75.3% |
| 3919843 | 604.1.1.124 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_6 | 0.63 | 46.0 | 4.37e-01 | 75.9% | 75.4% |
| 5058507 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.62 | 46.0 | 4.42e-01 | 75.9% | 68.0% |
| 4987854 | 109.3.1.487 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DUF5667 | 0.62 | 52.0 | 4.76e-01 | 88.4% | 95.0% |
| 3412176 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.61 | 56.0 | 5.20e-01 | 100.0% | 82.9% |
| 4005523 | 3860.1.1.167 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › MscS_porin | 0.58 | 41.0 | 3.63e-01 | 75.0% | 51.2% |
| 3528346 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.58 | 50.0 | 4.26e-01 | 89.3% | 64.2% |
| 3377464 | 3755.3.1.285 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NET2A | 0.57 | 39.0 | 3.46e-01 | 71.4% | 82.5% |
| 3209446 | 632.22.1.131 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › SOG2 | 0.56 | 39.0 | 3.75e-01 | 72.3% | 94.1% |
| 3345919 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 42.0 | 4.26e-01 | 100.0% | 80.9% |
| 3935032 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.55 | 46.0 | 4.80e-01 | 88.4% | 95.2% |
| 5041595 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.54 | 47.0 | 3.93e-01 | 99.1% | 67.8% |
| 3476377 | 109.4.1.546 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ecm29 | 0.53 | 42.0 | 2.75e-01 | 87.5% | 32.6% |
| 3940791 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.52 | 44.0 | 4.67e-01 | 91.1% | 99.0% |
| 3718338 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.52 | 40.0 | 3.81e-01 | 87.5% | 68.1% |
| 3275930 | 4177.1.1.5 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 | 0.51 | 47.0 | 3.57e-01 | 100.0% | 77.2% |