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MK448335.1__QBX07463.1__JavanS148_0011__00011
Bact-VirMK448335.1__QBX07463.1__JavanS148_0011__00011
Identity
- Accession:
- MK448335 ↗
- Kingdom:
- phage
Quality
93.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 37-96
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vjfA00 | 3.90.960.10 | Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain | 0.94 | 88.0 | 6.18e-01 | 100.0% | 36.1% |
| 3op6A00 | 3.90.960.10 | Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain | 0.82 | 64.0 | 4.77e-01 | 100.0% | 34.9% |
| 1dbuA00 | 3.90.960.10 | Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain | 0.81 | 63.0 | 4.67e-01 | 100.0% | 33.6% |
| 1wdvA00 | 3.90.960.10 | Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain | 0.79 | 61.0 | 4.57e-01 | 100.0% | 34.0% |
| 3memA01 | 3.90.960.10 | Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain | 0.78 | 62.0 | 4.66e-01 | 100.0% | 36.6% |
| 1xjkA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.68 | 57.0 | 3.33e-01 | 100.0% | 12.3% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 48.0 | 3.99e-01 | 78.3% | 45.9% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 47.0 | 3.90e-01 | 78.3% | 47.2% |
| 5vqjA00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.64 | 44.0 | 3.04e-01 | 73.3% | 63.9% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 44.0 | 3.84e-01 | 76.7% | 56.4% |
| 1xjhA00 | 3.90.1280.10 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like | 0.61 | 45.0 | 4.53e-01 | 86.7% | 79.0% |
| 4ljiB00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.61 | 42.0 | 3.33e-01 | 73.3% | 93.9% |
| 4bwxA03 | 1.10.287.3700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 47.0 | 4.29e-01 | 88.3% | 86.3% |
| 2pd2A00 | 3.40.1260.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like | 0.58 | 51.0 | 4.24e-01 | 100.0% | 66.7% |
| 6yu8A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 42.0 | 2.86e-01 | 100.0% | 19.7% |
| 1vq0A02 | 3.90.1280.10 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like | 0.56 | 40.0 | 4.09e-01 | 90.0% | 82.5% |
| 2wshA00 | 3.40.1440.40 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.56 | 43.0 | 3.44e-01 | 88.3% | 40.3% |
| 5niiB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 48.0 | 3.44e-01 | 100.0% | 55.6% |
| 4xr7F02 | 1.10.287.3700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 44.0 | 3.85e-01 | 88.3% | 75.6% |
| 5oomK00 | 3.90.1180.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 | 0.55 | 38.0 | 2.76e-01 | 73.3% | 47.5% |
| 6gnaA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 46.0 | 3.40e-01 | 100.0% | 36.7% |
| 2q0lA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 45.0 | 3.27e-01 | 100.0% | 35.3% |
| 5ygqA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 45.0 | 3.14e-01 | 100.0% | 31.5% |
| 3qsgA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 38.0 | 2.89e-01 | 100.0% | 29.8% |
| 8b4hA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 44.0 | 3.30e-01 | 100.0% | 37.0% |
| 2nwhA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 45.0 | 2.85e-01 | 100.0% | 40.1% |
| 3ib5A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.51 | 44.0 | 2.77e-01 | 100.0% | 34.2% |
| 2zdiC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 36.0 | 2.92e-01 | 81.7% | 43.9% |
| 3weeB03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.51 | 38.0 | 3.15e-01 | 83.3% | 87.0% |
| 2z86D02 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.51 | 38.0 | 2.61e-01 | 86.7% | 63.1% |
| 3ab1B01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 45.0 | 3.06e-01 | 100.0% | 71.2% |
| 3v7nA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 40.0 | 2.90e-01 | 100.0% | 42.3% |
ECOD (61)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4028261 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.96 | 89.0 | 6.24e-01 | 98.3% | 35.8% |
| 3969678 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.93 | 87.0 | 6.17e-01 | 100.0% | 37.5% |
| 2099779 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.93 | 86.0 | 6.04e-01 | 100.0% | 35.9% |
| 4257815 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.92 | 85.0 | 6.06e-01 | 100.0% | 37.7% |
| 5048810 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.89 | 82.0 | 5.86e-01 | 100.0% | 37.5% |
| 3354546 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.88 | 80.0 | 5.72e-01 | 100.0% | 36.4% |
| 4851946 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.88 | 81.0 | 5.80e-01 | 100.0% | 38.4% |
| 3588001 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.85 | 73.0 | 5.30e-01 | 100.0% | 36.1% |
| 4991814 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.83 | 65.0 | 4.84e-01 | 96.7% | 35.7% |
| 140656 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.82 | 64.0 | 4.76e-01 | 100.0% | 34.7% |
| 3973747 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.80 | 63.0 | 4.78e-01 | 100.0% | 37.1% |
| 139245 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.78 | 62.0 | 4.65e-01 | 100.0% | 36.4% |
| 3781034 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.75 | 66.0 | 4.94e-01 | 100.0% | 41.3% |
| 3786162 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.72 | 53.0 | 4.52e-01 | 78.3% | 58.9% |
| 3586018 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.70 | 51.0 | 3.82e-01 | 76.7% | 35.7% |
| 3228583 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.70 | 51.0 | 4.12e-01 | 78.3% | 43.5% |
| 3594965 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.70 | 51.0 | 3.87e-01 | 78.3% | 36.4% |
| 3406351 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.69 | 50.0 | 4.07e-01 | 76.7% | 45.5% |
| 3482328 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.69 | 50.0 | 4.17e-01 | 78.3% | 47.6% |
| 4977598 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.68 | 50.0 | 4.06e-01 | 78.3% | 45.5% |
| 3265214 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.68 | 49.0 | 4.00e-01 | 78.3% | 43.5% |
| 3712081 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.67 | 49.0 | 4.03e-01 | 78.3% | 45.5% |
| 3394225 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.67 | 49.0 | 3.93e-01 | 76.7% | 43.5% |
| 3579472 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.67 | 48.0 | 3.79e-01 | 78.3% | 38.5% |
| 3392569 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.67 | 48.0 | 3.77e-01 | 76.7% | 43.2% |
| 4928315 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.66 | 48.0 | 4.52e-01 | 78.3% | 66.7% |
| 60305 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.66 | 48.0 | 4.02e-01 | 78.3% | 47.2% |
| 4259368 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.66 | 48.0 | 3.86e-01 | 78.3% | 41.7% |
| 3593339 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.66 | 48.0 | 3.90e-01 | 78.3% | 43.5% |
| 3550136 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.66 | 48.0 | 3.89e-01 | 78.3% | 43.5% |
| 3675304 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.66 | 48.0 | 3.85e-01 | 78.3% | 41.7% |
| 3808578 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.66 | 48.0 | 4.50e-01 | 78.3% | 67.6% |
| 4017372 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.66 | 47.0 | 3.81e-01 | 76.7% | 43.5% |
| 3234976 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.65 | 47.0 | 3.93e-01 | 78.3% | 45.5% |
| 3935332 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.65 | 48.0 | 3.74e-01 | 78.3% | 38.5% |
| 1000517 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.64 | 47.0 | 3.96e-01 | 78.3% | 49.5% |
| 3739884 | 1016.1.1.1 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK | 0.61 | 47.0 | 3.69e-01 | 83.3% | 69.0% |
| 3680858 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.61 | 45.0 | 3.31e-01 | 78.3% | 54.5% |
| 4078006 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.61 | 48.0 | 3.99e-01 | 85.0% | 98.1% |
| 3328158 | 2003.1.10.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N | 0.61 | 48.0 | 3.47e-01 | 88.3% | 83.8% |
| 3283278 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.58 | 43.0 | 3.28e-01 | 78.3% | 80.0% |
| 2321219 | 1016.1.1.1 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK | 0.57 | 46.0 | 3.55e-01 | 88.3% | 59.7% |
| 3580051 | 2490.2.1.1 ↗ | a/b three-layered sandwiches › Ribosomal protein L13/L15p/L18e/L32e › Ribosomal protein L13 and L16-A › Ribosomal protein L13 and L16-A › Ribosomal_L13 | 0.57 | 40.0 | 2.81e-01 | 73.3% | 45.4% |
| 3961488 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.56 | 47.0 | 3.45e-01 | 100.0% | 61.1% |
| 3885554 | 2490.2.1.1 ↗ | a/b three-layered sandwiches › Ribosomal protein L13/L15p/L18e/L32e › Ribosomal protein L13 and L16-A › Ribosomal protein L13 and L16-A › Ribosomal_L13 | 0.56 | 39.0 | 2.78e-01 | 73.3% | 46.9% |
| 4065083 | 4203.1.1.1 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 | 0.56 | 40.0 | 4.19e-01 | 86.7% | 87.3% |
| 3525801 | 6171.1.1.0 ↗ | alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases | 0.55 | 41.0 | 3.16e-01 | 86.7% | 70.9% |
| 3661784 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.55 | 45.0 | 2.91e-01 | 95.0% | 66.8% |
| 3489929 | 2490.2.1.1 ↗ | a/b three-layered sandwiches › Ribosomal protein L13/L15p/L18e/L32e › Ribosomal protein L13 and L16-A › Ribosomal protein L13 and L16-A › Ribosomal_L13 | 0.54 | 38.0 | 2.82e-01 | 73.3% | 55.5% |
| 4148130 | 4203.1.1.1 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 | 0.54 | 40.0 | 4.11e-01 | 90.0% | 90.9% |
| 3248457 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.54 | 37.0 | 3.33e-01 | 73.3% | 87.8% |
| 4608282 | 2484.1.1.70 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FtsA | 0.51 | 43.0 | 2.67e-01 | 95.0% | 21.8% |
| 2675169 | 2490.2.1.1 ↗ | a/b three-layered sandwiches › Ribosomal protein L13/L15p/L18e/L32e › Ribosomal protein L13 and L16-A › Ribosomal protein L13 and L16-A › Ribosomal_L13 | 0.51 | 35.0 | 2.54e-01 | 73.3% | 43.5% |
| 2701125 | 3146.1.1.1 ↗ | a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_glycop_H | 0.51 | 43.0 | 2.58e-01 | 100.0% | 53.5% |
| 5076232 | 2004.1.1.233 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cas3-like_C_2 | 0.51 | 42.0 | 2.56e-01 | 100.0% | 37.7% |
| 4072685 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.51 | 40.0 | 3.73e-01 | 86.7% | 96.0% |
| 3964249 | 4203.1.1.1 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 | 0.51 | 39.0 | 3.92e-01 | 95.0% | 88.3% |
| 5077380 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.51 | 42.0 | 3.49e-01 | 98.3% | 58.3% |
| 5016129 | 101.1.9.75 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF61 | 0.50 | 37.0 | 3.58e-01 | 81.7% | 97.1% |
| 3932471 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.50 | 41.0 | 2.62e-01 | 95.0% | 68.5% |
| 4016050 | 2490.2.1.1 ↗ | a/b three-layered sandwiches › Ribosomal protein L13/L15p/L18e/L32e › Ribosomal protein L13 and L16-A › Ribosomal protein L13 and L16-A › Ribosomal_L13 | 0.50 | 42.0 | 3.06e-01 | 100.0% | 58.2% |