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MK448348.1__QBX07743.1__JavanS175_0002__00019

Bact-Vir

MK448348.1__QBX07743.1__JavanS175_0002__00019

Identity

Accession:
MK448348 ↗
Kingdom:
phage

Quality

95.5 mean pLDDT

Taxonomy

Streptococcus_satellite_phage_Javan175

TaxID: 2558555

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-105
PDB
Domain cluster: rep: MK448445.1__QBX09490.1__JavanS344_0018__00018__D141-238
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 62.0 6.89e-01 81.2% 95.0%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 50.0 6.13e-01 86.1% 96.9%
4m0mA03 1.20.1270.430 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.65 39.0 4.41e-01 92.1% 77.2%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 44.0 4.53e-01 95.0% 74.5%
2b3tB01 6.10.140.1980 Special › Helix non-globular › Helix Hairpins › 0.64 40.0 4.66e-01 99.0% 96.9%
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.63 37.0 4.18e-01 99.0% 78.4%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 49.0 3.92e-01 84.2% 48.1%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 34.0 3.73e-01 73.3% 65.1%
7q37A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.59 44.0 3.52e-01 81.2% 55.6%
2lnlA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.58 51.0 3.70e-01 99.0% 74.7%
2w9yA00 1.20.120.1100 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.57 44.0 4.06e-01 84.2% 86.0%
5gl7A01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.55 38.0 3.30e-01 71.3% 72.9%
4hteA03 1.10.167.30 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.53 35.0 3.82e-01 86.1% 83.7%
3pwfA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 39.0 3.60e-01 76.2% 90.1%
2h4pA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.53 44.0 3.34e-01 91.1% 83.5%
1di1A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 47.0 3.40e-01 99.0% 88.3%
4i9oA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.52 31.0 3.51e-01 93.1% 78.2%
5unhA02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 44.0 3.34e-01 100.0% 77.8%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589001 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.89 84.0 8.17e-01 100.0% 91.7%
4165729 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.87 61.0 5.08e-01 72.3% 44.2%
4233279 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.87 60.0 4.41e-01 77.2% 30.0%
3974118 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.84 71.0 7.46e-01 99.0% 100.0%
3946805 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.83 60.0 6.87e-01 74.3% 100.0%
3964463 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.83 59.0 5.78e-01 74.3% 68.2%
4279016 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.83 62.0 6.96e-01 84.2% 98.8%
4148139 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.82 60.0 5.14e-01 77.2% 49.7%
4060124 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.82 59.0 5.07e-01 77.2% 49.0%
4518447 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.81 61.0 5.96e-01 78.2% 71.8%
3663639 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.81 61.0 5.06e-01 80.2% 47.3%
3980765 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.80 60.0 4.98e-01 77.2% 48.5%
4253265 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.80 60.0 4.98e-01 77.2% 48.5%
3297365 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.80 60.0 4.95e-01 78.2% 46.2%
3303765 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.80 59.0 5.01e-01 77.2% 50.0%
4084282 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.80 60.0 6.48e-01 78.2% 92.9%
4524644 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.79 58.0 4.49e-01 76.2% 37.1%
1111579 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.79 59.0 5.81e-01 77.2% 75.5%
3668669 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.79 59.0 6.34e-01 80.2% 91.8%
1945689 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.79 58.0 5.63e-01 77.2% 70.8%
3826046 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.79 58.0 4.89e-01 78.2% 47.3%
3329805 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.78 57.0 4.87e-01 77.2% 50.0%
4258677 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.77 55.0 4.17e-01 84.2% 32.9%
None — 0.77 58.0 3.90e-01 78.2% 23.1%
3428775 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 58.0 4.00e-01 78.2% 25.4%
3339569 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.77 57.0 6.07e-01 77.2% 87.6%
3347305 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.77 58.0 4.85e-01 78.2% 49.1%
4511316 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.77 55.0 4.87e-01 84.2% 53.2%
None — 0.76 52.0 3.98e-01 88.1% 32.3%
3644937 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.75 56.0 4.75e-01 80.2% 49.4%
4340199 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 68.0 6.01e-01 100.0% 89.7%
3588656 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 67.0 5.92e-01 100.0% 85.5%
4034281 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 67.0 6.48e-01 100.0% 95.5%
4033888 101.1.1.489 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF722 0.71 60.0 5.56e-01 93.1% 100.0%
3027028 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.71 55.0 5.36e-01 83.2% 75.2%
5012037 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 52.0 5.51e-01 100.0% 91.1%
5011671 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 52.0 5.30e-01 100.0% 85.0%
3683607 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.65 46.0 3.11e-01 72.3% 69.7%
4317076 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 50.0 5.32e-01 99.0% 93.2%
3627888 101.1.1.64 ↗ alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.65 52.0 4.85e-01 100.0% 68.8%
4024517 101.1.1.64 ↗ alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.64 50.0 4.81e-01 100.0% 73.0%
4982527 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 50.0 5.07e-01 100.0% 84.0%
3168672 101.1.10.2 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C_2 0.63 44.0 3.20e-01 72.3% 58.6%
5021358 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.61 52.0 3.31e-01 95.0% 31.7%
5024110 604.39.1.1 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › CbiM 0.59 47.0 3.84e-01 85.1% 83.7%
4515233 5059.1.1.18 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UPF0060 0.59 47.0 4.59e-01 85.1% 99.1%
4269155 5059.1.1.18 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UPF0060 0.59 43.0 4.36e-01 77.2% 100.0%
3280686 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.59 42.0 4.23e-01 80.2% 75.0%
4971760 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.59 43.0 3.78e-01 78.2% 95.6%
3962550 5067.1.1.0 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.58 45.0 3.65e-01 83.2% 80.0%
5007486 101.1.1.540 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.58 41.0 4.62e-01 77.2% 100.0%
3182958 101.1.1.64 ↗ alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.56 52.0 4.67e-01 100.0% 78.5%
3219497 103.4.1.5 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.54 32.0 3.74e-01 91.1% 82.9%
4176312 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.53 46.0 4.69e-01 98.0% 100.0%
4031113 4070.1.1.2 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.53 42.0 3.71e-01 88.1% 92.5%
4944224 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.50 38.0 3.09e-01 83.2% 83.7%