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MK448361.1__QBX07982.1__JavanS208_0011__00011
Bact-VirMK448361.1__QBX07982.1__JavanS208_0011__00011
Identity
- Accession:
- MK448361 ↗
- Kingdom:
- phage
Quality
83.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-53
D2
medium
residues 54-116
Domain cluster:
rep: MK448708.1__QBX15994.1__Javan23_0029__00029__D2-61
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.80 | 66.0 | 6.68e-01 | 98.4% | 93.7% |
| 5xe7A01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.77 | 56.0 | 4.27e-01 | 82.5% | 34.5% |
| 5fgmA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 64.0 | 6.43e-01 | 100.0% | 93.8% |
| 8gy0A01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.74 | 56.0 | 3.58e-01 | 79.4% | 37.7% |
| 6juvB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 53.0 | 5.02e-01 | 81.0% | 64.0% |
| 8gr7A01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.74 | 56.0 | 3.46e-01 | 79.4% | 33.6% |
| 2w48B01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 54.0 | 5.78e-01 | 82.5% | 96.2% |
| 4okmD00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.72 | 54.0 | 3.41e-01 | 79.4% | 32.1% |
| 8h72B01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.70 | 55.0 | 3.43e-01 | 82.5% | 34.4% |
| 1v4aA03 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.70 | 62.0 | 4.68e-01 | 100.0% | 73.9% |
| 3v1vA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.70 | 54.0 | 3.42e-01 | 82.5% | 33.8% |
| 6vydA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.70 | 55.0 | 3.51e-01 | 84.1% | 36.6% |
| 7y9hB01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.69 | 53.0 | 3.37e-01 | 82.5% | 32.4% |
| 1w98B01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.69 | 48.0 | 3.66e-01 | 84.1% | 31.3% |
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.68 | 54.0 | 4.79e-01 | 88.9% | 74.5% |
| 2w7nA00 | 1.10.10.2690 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.68 | 57.0 | 5.09e-01 | 100.0% | 66.0% |
| 2lhrA00 | 1.20.58.1270 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 47.0 | 4.33e-01 | 93.7% | 57.7% |
| 2v9vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 45.0 | 4.60e-01 | 74.6% | 71.7% |
| 2mgqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 51.0 | 5.01e-01 | 87.3% | 100.0% |
| 3cqcB02 | 1.25.40.700 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.66 | 40.0 | 3.44e-01 | 93.7% | 39.6% |
| 1paqA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.66 | 51.0 | 3.82e-01 | 85.7% | 36.0% |
| 1t6cA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.66 | 49.0 | 3.55e-01 | 93.7% | 28.2% |
| 2hytA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.65 | 50.0 | 3.62e-01 | 85.7% | 36.3% |
| 2mbgA01 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.65 | 48.0 | 3.45e-01 | 81.0% | 28.1% |
| 2l4mA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 47.0 | 4.63e-01 | 85.7% | 73.9% |
| 3cqxC00 | 1.20.58.890 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 55.0 | 5.08e-01 | 100.0% | 74.1% |
| 1zarA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 47.0 | 4.28e-01 | 87.3% | 64.0% |
| 1hs7A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 48.0 | 4.22e-01 | 98.4% | 56.7% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.60 | 49.0 | 4.70e-01 | 100.0% | 78.9% |
| 3lmmB05 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 40.0 | 4.13e-01 | 74.6% | 73.8% |
| 3g3zA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 41.0 | 4.09e-01 | 74.6% | 70.3% |
| 3mc1A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 50.0 | 4.94e-01 | 95.2% | 98.5% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.58 | 45.0 | 4.13e-01 | 100.0% | 64.7% |
| 2lf0A01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.58 | 45.0 | 4.62e-01 | 96.8% | 90.0% |
| 1f20A01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.58 | 46.0 | 3.42e-01 | 87.3% | 95.1% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 43.0 | 3.60e-01 | 96.8% | 45.3% |
| 4bqqA01 | 3.40.50.1390 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain | 0.55 | 47.0 | 3.68e-01 | 96.8% | 91.4% |
| 2qtlA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.55 | 42.0 | 3.16e-01 | 82.5% | 95.5% |
| 4ikhA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 46.0 | 3.71e-01 | 95.2% | 48.8% |
| 2h56A01 | 1.10.1670.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › | 0.53 | 42.0 | 3.65e-01 | 88.9% | 64.4% |
| 1on2A02 | 1.10.60.10 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain | 0.53 | 36.0 | 3.67e-01 | 71.4% | 71.4% |
| 4evfA02 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.52 | 35.0 | 3.40e-01 | 74.6% | 60.8% |
| 4n6cB00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.52 | 46.0 | 3.34e-01 | 100.0% | 60.2% |
| 1aabA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.51 | 45.0 | 4.15e-01 | 100.0% | 81.9% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3972282 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.84 | 73.0 | 6.76e-01 | 95.2% | 75.9% |
| 4112812 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.84 | 73.0 | 6.14e-01 | 98.4% | 58.1% |
| 4570076 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.83 | 75.0 | 4.79e-01 | 100.0% | 22.5% |
| 4585396 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.83 | 74.0 | 5.46e-01 | 100.0% | 39.4% |
| 4563221 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.82 | 73.0 | 6.37e-01 | 100.0% | 66.3% |
| 3693312 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.81 | 60.0 | 6.13e-01 | 81.0% | 81.7% |
| 4097443 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.80 | 71.0 | 5.18e-01 | 100.0% | 37.1% |
| 4213931 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.80 | 71.0 | 6.46e-01 | 100.0% | 74.1% |
| 4674817 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.80 | 71.0 | 5.13e-01 | 100.0% | 36.0% |
| 3578154 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.77 | 65.0 | 5.85e-01 | 98.4% | 67.8% |
| 3949654 | 101.1.1.16 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_WhiA | 0.73 | 64.0 | 5.43e-01 | 100.0% | 61.0% |
| 4927767 | 101.1.1.251 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_ParB | 0.73 | 49.0 | 4.89e-01 | 77.8% | 67.7% |
| 3957517 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 63.0 | 4.98e-01 | 100.0% | 47.4% |
| 4354970 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.72 | 54.0 | 3.36e-01 | 79.4% | 31.9% |
| 3262779 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.71 | 48.0 | 5.05e-01 | 76.2% | 80.0% |
| 4174198 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.71 | 57.0 | 4.92e-01 | 88.9% | 73.0% |
| 3259759 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.70 | 54.0 | 3.38e-01 | 82.5% | 32.6% |
| 4956611 | 101.1.2.650 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7343 | 0.69 | 55.0 | 5.01e-01 | 87.3% | 64.7% |
| 4936197 | 101.1.1.62 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_24 | 0.69 | 48.0 | 4.97e-01 | 76.2% | 79.3% |
| 3620214 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 60.0 | 5.24e-01 | 100.0% | 86.3% |
| 3603007 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.68 | 52.0 | 4.96e-01 | 85.7% | 70.7% |
| 3206332 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 53.0 | 5.26e-01 | 85.7% | 87.7% |
| 3793382 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.67 | 59.0 | 5.11e-01 | 100.0% | 84.0% |
| 3282985 | 101.1.2.508 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25872 | 0.67 | 53.0 | 4.80e-01 | 87.3% | 63.5% |
| 4969273 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.67 | 57.0 | 4.96e-01 | 95.2% | 73.5% |
| 3727401 | 101.1.1.216 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_8 | 0.67 | 51.0 | 5.42e-01 | 82.5% | 94.5% |
| 3304636 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.66 | 45.0 | 4.61e-01 | 71.4% | 75.0% |
| 4976781 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 43.0 | 4.45e-01 | 74.6% | 71.7% |
| 4965902 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 50.0 | 4.22e-01 | 87.3% | 49.5% |
| 2521 | 101.1.1.5 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › TetR_N | 0.65 | 52.0 | 4.69e-01 | 88.9% | 78.4% |
| 1031323 | 101.1.1.276 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding, Myb_DNA-bind_6 | 0.65 | 45.0 | 4.52e-01 | 76.2% | 71.2% |
| 3972530 | 131.1.1.7 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HDOD | 0.65 | 57.0 | 3.64e-01 | 98.4% | 62.2% |
| 3376529 | 101.1.1.67 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 | 0.65 | 46.0 | 4.95e-01 | 76.2% | 96.0% |
| 3965373 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.64 | 57.0 | 5.55e-01 | 100.0% | 94.3% |
| 5033577 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.63 | 44.0 | 4.74e-01 | 74.6% | 92.0% |
| 3092428 | 101.1.1.86 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Raf1_HTH | 0.63 | 52.0 | 4.78e-01 | 93.7% | 84.7% |
| 1291586 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.62 | 48.0 | 3.73e-01 | 84.1% | 50.4% |
| 4986198 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.62 | 50.0 | 4.51e-01 | 90.5% | 67.8% |
| 5041695 | 101.1.2.110 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_IclR | 0.61 | 45.0 | 4.45e-01 | 87.3% | 72.9% |
| 3792 | 603.1.1.6 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 | 0.61 | 48.0 | 4.22e-01 | 98.4% | 56.7% |
| 4983292 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 50.0 | 4.38e-01 | 92.1% | 78.9% |
| 3953906 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 42.0 | 3.94e-01 | 76.2% | 58.7% |
| 5047333 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 44.0 | 4.03e-01 | 87.3% | 56.7% |
| 4942252 | 101.1.2.110 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_IclR | 0.60 | 48.0 | 4.63e-01 | 92.1% | 96.0% |
| 5079009 | 101.1.2.650 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7343 | 0.59 | 44.0 | 4.22e-01 | 84.1% | 87.2% |
| 4954319 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.59 | 50.0 | 3.48e-01 | 100.0% | 35.6% |
| 3472889 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 39.0 | 4.03e-01 | 74.6% | 75.0% |
| 3494294 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 39.0 | 3.82e-01 | 76.2% | 64.4% |
| 4929470 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.56 | 45.0 | 3.86e-01 | 92.1% | 64.8% |
| 3226769 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 40.0 | 3.93e-01 | 100.0% | 74.3% |
| 5048234 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 36.0 | 3.59e-01 | 74.6% | 65.7% |
| 5027617 | 3054.1.1.0 ↗ | alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol | 0.51 | 38.0 | 3.29e-01 | 79.4% | 50.0% |