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MK448382.1__QBX08312.1__JavanS245_0007__00005
Bact-VirMK448382.1__QBX08312.1__JavanS245_0007__00005
Identity
- Accession:
- MK448382 ↗
- Kingdom:
- phage
Quality
84.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-101
Domain cluster:
rep: IMGVR_UViG_3300009362_000174-3300009362-Ga0118673_10090134__D7-95
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yw5A01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.58 | 35.0 | 4.16e-01 | 73.7% | 95.2% |
| 4j0eA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 31.0 | 2.49e-01 | 100.0% | 26.7% |
| 2ly1A03 | 3.30.420.610 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like | 0.55 | 37.0 | 4.06e-01 | 74.7% | 84.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3910904 | 3553.1.1.1 ↗ | alpha arrays › Nucleophosmin DNA-binding domain › Nucleophosmin DNA-binding domain › Nucleophosmin DNA-binding domain › NPM1-C | 0.67 | 35.0 | 4.70e-01 | 71.7% | 100.0% |
| 4001707 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.61 | 36.0 | 3.87e-01 | 79.8% | 68.2% |
| 3925690 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.58 | 36.0 | 3.97e-01 | 81.8% | 80.0% |
| 3481637 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 31.0 | 3.99e-01 | 73.7% | 100.0% |
| 3215554 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.55 | 40.0 | 3.88e-01 | 75.8% | 68.2% |
| 4644747 | 330.16.1.0 ↗ | a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain | 0.54 | 41.0 | 4.43e-01 | 81.8% | 98.8% |
| 3802925 | 4.1.1.296 ↗ | beta barrels › SH3 › SH3 › SH3 › TDBD | 0.53 | 36.0 | 3.89e-01 | 71.7% | 87.5% |
| 3416458 | 386.1.1.259 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29169 | 0.51 | 23.0 | 3.01e-01 | 75.8% | 84.4% |
| 3929989 | 330.16.1.2 ↗ | a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain › KAP | 0.50 | 38.0 | 4.08e-01 | 80.8% | 98.8% |
D2
medium
residues 140-235
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8hbfB01 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.59 | 35.0 | 2.92e-01 | 83.3% | 30.9% |
| 1mhyG01 | 1.20.1280.10 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 1 | 0.56 | 28.0 | 3.25e-01 | 77.1% | 66.2% |
| 6nyyE01 | 1.20.58.760 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Peptidase M41 | 0.55 | 38.0 | 3.21e-01 | 71.9% | 65.9% |
| 1lfkA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.53 | 40.0 | 2.72e-01 | 80.2% | 68.8% |