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MK448384.1__QBX08341.1__JavanS250_0008__00018
Bact-VirMK448384.1__QBX08341.1__JavanS250_0008__00018
Identity
- Accession:
- MK448384 ↗
- Kingdom:
- phage
Quality
88.6
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-99
Domain cluster:
rep: IMGVR_UViG_3300013392_000008-3300013392-Ga0180015_10012401__D14-122
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2m4mA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.65 | 48.0 | 4.40e-01 | 77.3% | 91.1% |
| 1w1oA03 | 3.40.462.10 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain | 0.61 | 45.0 | 3.40e-01 | 76.3% | 75.4% |
| 3jtnB00 | 3.30.70.1950 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 45.0 | 4.65e-01 | 80.4% | 91.1% |
| 3p3dA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 41.0 | 4.28e-01 | 72.2% | 100.0% |
| 1l2mA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.58 | 44.0 | 4.19e-01 | 80.4% | 89.0% |
| 1earA02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.57 | 36.0 | 4.21e-01 | 78.4% | 91.3% |
| 2yx1A01 | 3.30.70.2580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 36.0 | 4.18e-01 | 77.3% | 100.0% |
| 3tvzB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 39.0 | 3.53e-01 | 75.3% | 98.5% |
| 3tj8A02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.53 | 37.0 | 4.08e-01 | 76.3% | 94.6% |
| 1gmuA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.52 | 35.0 | 3.91e-01 | 77.3% | 98.5% |
| 4mz0B05 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.50 | 33.0 | 3.81e-01 | 76.3% | 98.5% |
| 4erdA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.50 | 36.0 | 3.55e-01 | 77.3% | 86.1% |
| 4pg4B03 | 3.30.70.3100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 35.0 | 3.87e-01 | 79.4% | 94.7% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4940784 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.73 | 64.0 | 5.39e-01 | 93.8% | 63.9% |
| 5035614 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 33.0 | 4.09e-01 | 90.7% | 85.0% |
| 4461334 | 304.150.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA | 0.59 | 45.0 | 4.65e-01 | 80.4% | 93.3% |
| 3474429 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.59 | 44.0 | 4.24e-01 | 79.4% | 90.0% |
| 5068697 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.58 | 43.0 | 4.23e-01 | 77.3% | 96.2% |
| 5293 | 304.22.1.1 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C | 0.57 | 36.0 | 4.23e-01 | 78.4% | 92.6% |
| 4217450 | 304.22.1.1 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C | 0.56 | 36.0 | 4.17e-01 | 80.4% | 91.4% |
| 4127496 | 304.22.1.1 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C | 0.54 | 37.0 | 4.17e-01 | 78.4% | 93.3% |
| 4994750 | 304.24.1.5 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N | 0.54 | 33.0 | 3.99e-01 | 75.3% | 100.0% |
| 4249416 | 304.22.1.1 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C | 0.54 | 36.0 | 4.02e-01 | 77.3% | 94.3% |
| 3886674 | 868.1.1.5 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med18 | 0.54 | 43.0 | 3.38e-01 | 86.6% | 76.0% |
| 4472004 | 304.22.1.1 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C | 0.53 | 35.0 | 3.84e-01 | 76.3% | 86.7% |
| 4153537 | 304.22.1.1 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C | 0.53 | 35.0 | 3.73e-01 | 76.3% | 81.2% |
| 3224205 | 390.1.1.7 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 | 0.52 | 32.0 | 3.70e-01 | 78.4% | 85.7% |
| 3290985 | 304.169.1.3 ↗ | a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WCX | 0.52 | 38.0 | 4.20e-01 | 100.0% | 97.3% |
| 3211287 | 390.1.1.7 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 | 0.52 | 31.0 | 3.59e-01 | 78.4% | 82.9% |
| 3650049 | 304.9.1.11 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Nup35_RRM | 0.51 | 35.0 | 3.42e-01 | 71.1% | 93.6% |
| 3397457 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.50 | 26.0 | 3.19e-01 | 82.5% | 78.3% |
| 3219841 | 390.1.1.7 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 | 0.50 | 31.0 | 3.49e-01 | 78.4% | 82.9% |
| 5039780 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.50 | 28.0 | 3.20e-01 | 92.8% | 76.9% |
D2
high
residues 102-169
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gkmA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.71 | 50.0 | 4.02e-01 | 73.5% | 83.5% |
| 3h5qA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.68 | 56.0 | 5.58e-01 | 89.7% | 97.1% |
| 4ga4A01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.67 | 54.0 | 5.50e-01 | 88.2% | 98.5% |
| 6cy5A01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.61 | 42.0 | 3.87e-01 | 72.1% | 60.7% |
| 1bpoA02 | 1.25.40.30 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 52.0 | 4.06e-01 | 100.0% | 44.5% |
| 2elcA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.60 | 47.0 | 4.81e-01 | 88.2% | 94.0% |
| 1uouA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.60 | 49.0 | 4.91e-01 | 89.7% | 94.1% |
| 3oxfA05 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 45.0 | 4.41e-01 | 86.8% | 89.3% |
| 4uqxA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 48.0 | 4.46e-01 | 97.1% | 74.2% |
| 1a17A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 46.0 | 3.65e-01 | 94.1% | 40.3% |
| 5ffdA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.56 | 45.0 | 3.58e-01 | 86.8% | 92.7% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.55 | 37.0 | 3.92e-01 | 70.6% | 82.3% |
| 1o5xA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 46.0 | 3.21e-01 | 98.5% | 54.5% |
| 4fcaA03 | 1.10.390.30 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Peptidase M60, enhancin-like domain 3 | 0.54 | 42.0 | 3.28e-01 | 88.2% | 75.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3244407 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.82 | 56.0 | 5.89e-01 | 70.6% | 80.0% |
| 4103318 | 182.1.2.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Fe-S cluster domain of DNA primase › DNA_primase_lrg | 0.76 | 67.0 | 5.33e-01 | 98.5% | 57.8% |
| 5057453 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.76 | 68.0 | 5.56e-01 | 100.0% | 60.8% |
| 5068030 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.75 | 67.0 | 5.57e-01 | 100.0% | 64.2% |
| 3933997 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.74 | 51.0 | 4.71e-01 | 75.0% | 56.5% |
| 4494836 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.74 | 67.0 | 5.39e-01 | 100.0% | 57.7% |
| 5077614 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.74 | 63.0 | 6.16e-01 | 94.1% | 96.0% |
| 4978272 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.74 | 66.0 | 5.51e-01 | 98.5% | 63.5% |
| 5043574 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.73 | 65.0 | 5.32e-01 | 100.0% | 60.8% |
| 5045965 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.71 | 60.0 | 5.30e-01 | 94.1% | 68.0% |
| 5072206 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.71 | 61.0 | 5.04e-01 | 94.1% | 57.5% |
| 4536901 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.71 | 51.0 | 3.76e-01 | 75.0% | 33.5% |
| 4935112 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.71 | 61.0 | 5.13e-01 | 98.5% | 62.5% |
| 3740014 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 51.0 | 5.07e-01 | 79.4% | 81.4% |
| 4071151 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.66 | 58.0 | 4.71e-01 | 100.0% | 85.4% |
| 3236582 | 2004.1.1.104 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_2 | 0.64 | 45.0 | 3.04e-01 | 73.5% | 69.6% |
| 5067468 | 4133.1.1.0 ↗ | alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like | 0.64 | 52.0 | 5.34e-01 | 91.2% | 98.5% |
| 3704520 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 51.0 | 3.52e-01 | 89.7% | 25.3% |
| 4181400 | 184.1.1.1 ↗ | alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N | 0.61 | 47.0 | 4.83e-01 | 86.8% | 96.9% |
| 3423804 | 109.4.1.202 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 | 0.61 | 49.0 | 4.30e-01 | 92.6% | 60.9% |
| 4031004 | 184.1.1.0 ↗ | alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N | 0.59 | 45.0 | 4.61e-01 | 86.8% | 96.9% |
| None | — | 0.57 | 49.0 | 3.62e-01 | 98.5% | 75.0% | |
| 4026303 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 45.0 | 4.31e-01 | 91.2% | 90.0% |
| 3958866 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.54 | 35.0 | 2.76e-01 | 70.6% | 29.3% |