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MK448387.1__QBX08401.1__JavanS257_0011__00004

Bact-Vir

MK448387.1__QBX08401.1__JavanS257_0011__00004

Identity

Accession:
MK448387 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

Taxonomy

TaxID: 2558594

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-52
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00717.29 best Peptidase_S24 23.9 3.90e-05 94.2% 33.6%
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.73 64.0 4.84e-01 100.0% 95.2%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 49.0 4.03e-01 86.5% 57.4%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 53.0 4.39e-01 90.4% 61.5%
1wguA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 49.0 3.91e-01 86.5% 60.9%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 49.0 3.82e-01 86.5% 56.9%
2xvlA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.64 44.0 2.91e-01 73.1% 35.5%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.63 49.0 3.82e-01 86.5% 79.8%
1vwxH02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.63 45.0 3.61e-01 76.9% 84.5%
3bexA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 46.0 3.46e-01 80.8% 59.6%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.62 46.0 3.68e-01 82.7% 79.1%
1rl1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 45.0 3.73e-01 78.8% 100.0%
1nr0A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 50.0 3.12e-01 92.3% 71.5%
3b77A01 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.61 44.0 3.70e-01 80.8% 65.0%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 45.0 4.59e-01 84.6% 85.7%
4h0pA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 46.0 3.17e-01 86.5% 74.0%
5tkwA02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.60 44.0 4.13e-01 80.8% 87.9%
4ba0A01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.60 45.0 3.10e-01 84.6% 32.7%
5z62B02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.60 45.0 3.40e-01 84.6% 66.2%
1jyaB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.59 43.0 3.33e-01 75.0% 61.2%
3d31A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 45.0 4.14e-01 84.6% 73.2%
2wmfA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.59 40.0 3.06e-01 71.2% 62.7%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 4.06e-01 84.6% 67.9%
2wmmA02 3.30.70.3500 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MukB, hinge domain 0.59 42.0 3.30e-01 76.9% 38.9%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.59 45.0 3.56e-01 88.5% 80.0%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 43.0 4.21e-01 84.6% 74.1%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 43.0 3.61e-01 80.8% 100.0%
3kf6A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 45.0 3.57e-01 96.2% 83.1%
6i18A04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 42.0 3.40e-01 78.8% 79.4%
7kfuC01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.58 47.0 4.17e-01 90.4% 82.7%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.58 43.0 4.33e-01 96.2% 83.3%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 43.0 4.00e-01 82.7% 64.2%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.58 44.0 3.83e-01 84.6% 79.3%
1k8kA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 44.0 3.36e-01 86.5% 68.9%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 45.0 3.60e-01 96.2% 82.9%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 43.0 3.97e-01 84.6% 73.2%
4o8uA00 3.30.420.440 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF4152 0.56 47.0 3.10e-01 96.2% 93.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.18e-01 90.4% 74.2%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 44.0 3.02e-01 92.3% 50.2%
4nhxA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.55 37.0 2.51e-01 71.2% 66.7%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 40.0 3.28e-01 84.6% 84.2%
3obaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 40.0 2.61e-01 84.6% 31.4%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 41.0 2.80e-01 90.4% 40.4%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 40.0 2.86e-01 86.5% 74.3%
2eaqA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 39.0 3.43e-01 84.6% 76.4%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.53 40.0 3.52e-01 84.6% 75.6%
1skoA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 38.0 3.09e-01 84.6% 81.5%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 3.64e-01 94.2% 77.6%
3dlbA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 38.0 2.86e-01 92.3% 86.9%
3mi6A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.51 38.0 2.49e-01 90.4% 93.9%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.51 38.0 3.07e-01 86.5% 86.9%
7b2sA01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.50 39.0 2.91e-01 90.4% 66.5%
1x9yA01 3.10.500.10 Alpha Beta › Roll › prostaphopain b, domain 1 › Staphopain proregion domain 0.50 38.0 2.77e-01 86.5% 88.2%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3164898 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.74 56.0 4.57e-01 88.5% 44.2%
3595376 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 58.0 4.07e-01 84.6% 38.1%
4331428 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.74 65.0 4.75e-01 100.0% 86.4%
4036705 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.73 65.0 4.72e-01 98.1% 86.7%
4406602 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.73 64.0 4.71e-01 100.0% 91.3%
3973676 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.71 62.0 4.71e-01 100.0% 95.2%
3737804 220.1.1.121 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 0.70 54.0 4.36e-01 86.5% 61.9%
3250994 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 53.0 4.98e-01 84.6% 100.0%
4215069 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 45.0 3.76e-01 73.1% 38.9%
3255946 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 51.0 4.52e-01 86.5% 78.8%
4960002 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 54.0 4.63e-01 96.2% 90.0%
5047859 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.65 51.0 4.61e-01 84.6% 65.7%
3627527 3794.1.1.3 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT 0.65 48.0 3.51e-01 80.8% 40.0%
3933016 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.65 51.0 3.22e-01 88.5% 94.6%
4001056 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.64 51.0 4.18e-01 88.5% 70.0%
4237578 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.64 47.0 3.60e-01 82.7% 34.2%
3843072 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.64 54.0 3.46e-01 98.1% 82.9%
4311691 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.64 49.0 3.65e-01 84.6% 37.0%
3816768 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.63 49.0 3.09e-01 84.6% 95.6%
4484131 4161.1.1.0 beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.63 53.0 3.41e-01 98.1% 70.5%
4236900 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.63 48.0 3.66e-01 84.6% 42.6%
4963902 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.63 46.0 3.79e-01 80.8% 70.0%
4497740 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.63 46.0 4.46e-01 82.7% 70.0%
3231448 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.62 53.0 3.77e-01 98.1% 35.8%
3596151 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.62 46.0 3.70e-01 80.8% 74.3%
4165211 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.61 46.0 3.44e-01 84.6% 35.9%
3915679 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.61 44.0 3.26e-01 76.9% 28.6%
None 0.61 47.0 2.87e-01 86.5% 67.7%
3603357 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.46e-01 84.6% 78.2%
3988584 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.61 44.0 3.62e-01 82.7% 41.0%
4218917 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.61 44.0 2.82e-01 78.8% 33.0%
3279508 283.1.1.4 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › ThrE 0.60 44.0 3.31e-01 78.8% 65.2%
4236717 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 47.0 3.67e-01 88.5% 41.7%
4391061 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 46.0 3.56e-01 84.6% 39.2%
4969052 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 47.0 2.92e-01 90.4% 95.8%
3961639 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.59 43.0 4.12e-01 76.9% 80.0%
3924597 330.16.1.0 a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.59 43.0 3.97e-01 80.8% 90.0%
3526919 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.59 43.0 3.62e-01 80.8% 44.2%
4998346 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.59 45.0 3.43e-01 84.6% 39.2%
3970503 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 45.0 3.44e-01 84.6% 44.2%
3476170 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 44.0 3.56e-01 84.6% 44.3%
3283507 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.59 41.0 3.49e-01 75.0% 55.6%
4979007 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.59 46.0 3.35e-01 84.6% 98.6%
3398496 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.59 42.0 4.21e-01 90.4% 76.4%
4057537 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.58 45.0 3.55e-01 90.4% 80.0%
3838239 2484.1.1.262 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27037 0.58 42.0 3.10e-01 82.7% 87.1%
3227025 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 43.0 4.13e-01 80.8% 91.7%
4948172 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.58 44.0 3.67e-01 84.6% 98.9%
3990517 5.1.4.502 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IFT80_2nd 0.58 46.0 2.66e-01 88.5% 42.2%
3941442 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.57 43.0 3.33e-01 84.6% 42.2%
4200272 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.57 46.0 3.92e-01 92.3% 58.9%
3510029 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 39.0 3.77e-01 80.8% 63.3%
4977730 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.57 43.0 4.26e-01 84.6% 98.2%
4986345 319.1.1.23 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.57 43.0 3.73e-01 84.6% 57.6%
4235194 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 43.0 3.34e-01 84.6% 36.0%
3464886 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 40.0 3.91e-01 88.5% 70.0%
3302660 109.4.1.1256 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.55 40.0 2.72e-01 78.8% 25.0%
4024730 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.55 44.0 3.81e-01 90.4% 71.8%
3419193 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.55 41.0 2.83e-01 84.6% 93.3%
3591236 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 39.0 2.23e-01 78.8% 8.8%
3253768 4.1.1.308 beta barrels › SH3 › SH3 › SH3 › PF31073 0.54 40.0 3.74e-01 88.5% 62.9%
3585077 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 41.0 3.20e-01 84.6% 59.2%
3701432 10.1.1.56 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.54 43.0 3.47e-01 92.3% 74.5%
3196140 223.2.1.42 a+b three layers › Profilin-like › profilin-like › profilin-like › Synaptobrevin 0.54 42.0 2.78e-01 90.4% 20.0%
3509345 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 38.0 3.18e-01 88.5% 40.0%
3958770 10.1.1.40 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Arabino_trans_N 0.53 43.0 3.69e-01 94.2% 77.8%
4046018 375.1.1.9 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.51 34.0 3.16e-01 71.2% 64.0%
3512816 5.1.4.313 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_BBS7 0.51 40.0 2.57e-01 96.2% 37.7%