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MK448389.1__QBX08444.1__JavanS260_0018__00004

Bact-Vir

MK448389.1__QBX08444.1__JavanS260_0018__00004

Identity

Accession:
MK448389 ↗
Kingdom:
phage

Quality

74.8 mean pLDDT

Taxonomy

Streptococcus_satellite_phage_Javan260

TaxID: 2558596

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-114
PDB
Domain cluster: rep: Bro25__YP_009702174__Heliothis_virescens_ascovirus_3g__1246651__D4-128
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02498.23 best Bro-N 45.3 1.50e-11 86.7% 84.4%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.68 59.0 5.88e-01 94.9% 98.0%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 26.0 3.19e-01 75.5% 55.4%
1sbxA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.64 56.0 5.54e-01 99.0% 90.6%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 25.0 3.37e-01 73.5% 76.0%
1wycA02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 41.0 3.19e-01 80.6% 73.3%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.53 39.0 3.36e-01 78.6% 98.7%
2o8mB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 29.0 3.42e-01 80.6% 83.3%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968916 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.88 75.0 7.30e-01 99.0% 82.9%
3163642 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.83 73.0 7.01e-01 100.0% 82.7%
4954530 101.1.9.143 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.72 62.0 5.87e-01 92.9% 90.4%
3978692 101.1.9.143 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.72 64.0 5.54e-01 96.9% 68.0%
3944712 101.1.9.40 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › P22_AR_N 0.71 61.0 6.00e-01 92.9% 86.7%
4008588 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.70 60.0 5.76e-01 91.8% 90.0%
4032453 101.1.9.78 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › AntA 0.70 55.0 5.63e-01 83.7% 88.4%
3529465 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.69 60.0 5.88e-01 93.9% 91.4%
3516620 101.1.9.107 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › PF25867 0.69 56.0 5.76e-01 87.8% 100.0%
3984393 101.1.9.88 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha 0.68 56.0 5.45e-01 89.8% 79.1%
4998593 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.68 55.0 5.24e-01 91.8% 74.8%
3480621 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.66 56.0 5.66e-01 92.9% 98.9%
3782429 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.66 59.0 5.91e-01 99.0% 100.0%
3932937 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.65 58.0 5.89e-01 98.0% 100.0%
4003595 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.65 56.0 5.11e-01 94.9% 74.4%
3888996 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.65 57.0 5.77e-01 96.9% 100.0%
3230106 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.64 55.0 5.53e-01 94.9% 100.0%
3893451 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.64 56.0 5.55e-01 99.0% 91.4%
3947416 101.1.9.88 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha 0.64 54.0 5.21e-01 91.8% 82.7%
4980261 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 40.0 3.92e-01 76.5% 61.0%
3400699 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.60 52.0 5.13e-01 96.9% 100.0%
3214527 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.59 50.0 4.68e-01 94.9% 84.0%
4981888 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 42.0 4.51e-01 96.9% 91.3%
3619623 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.57 36.0 4.28e-01 99.0% 96.9%
4552798 3699.1.1.0 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain 0.55 25.0 3.46e-01 84.7% 97.5%
1489671 375.1.1.47 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.54 29.0 3.58e-01 93.9% 89.3%
3467403 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.54 37.0 4.02e-01 83.7% 87.5%
3727445 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 39.0 3.87e-01 78.6% 81.0%
4971711 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 3.81e-01 83.7% 69.6%
3307901 304.7.1.20 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › MBTP1_N 0.52 35.0 3.96e-01 74.5% 95.7%
5057035 101.1.9.151 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Zn_ribbon_TFIIB 0.52 41.0 4.28e-01 85.7% 98.9%
5014686 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.52 24.0 3.07e-01 82.7% 76.4%
5061514 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 3.03e-01 77.6% 42.6%
5035858 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 29.0 2.66e-01 91.8% 40.7%
5045322 331.6.1.0 ↗ a+b two layers › TBP-like › MoaD-related protein, C-terminal domain › MoaD-related protein, C-terminal domain 0.50 40.0 3.76e-01 87.8% 92.8%
3276895 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 33.0 2.20e-01 83.7% 16.4%
D2 high residues 129-196
PDB