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MK448393.1__QBX08506.1__JavanS276_0003__00016

Bact-Vir

MK448393.1__QBX08506.1__JavanS276_0003__00016

Identity

Accession:
MK448393 ↗
Kingdom:
phage

Quality

78.2 mean pLDDT

Taxonomy

Streptococcus_satellite_phage_Javan276

TaxID: 2558600

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-67
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6h7bA01 1.10.1900.10 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein 0.70 53.0 5.07e-01 82.5% 85.1%
4boqA00 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.52 45.0 3.37e-01 100.0% 71.4%
1lkoA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 40.0 3.13e-01 85.7% 89.0%
3bz6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 33.0 3.06e-01 76.2% 46.7%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3245209 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.61 44.0 4.55e-01 81.0% 93.3%
3813290 2484.1.1.198 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, DUF4371 0.55 40.0 2.49e-01 77.8% 19.0%
3377590 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.52 37.0 3.13e-01 77.8% 80.0%
4478129 166.1.1.1 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.52 40.0 3.72e-01 92.1% 100.0%
3650365 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.51 37.0 3.29e-01 77.8% 95.8%