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MK448393.1__QBX08513.1__JavanS276_0010__00009

Bact-Vir

MK448393.1__QBX08513.1__JavanS276_0010__00009

Identity

Accession:
MK448393 ↗
Kingdom:
phage

Quality

83.8 mean pLDDT

Taxonomy

Streptococcus_satellite_phage_Javan276

TaxID: 2558600

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-64
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09954.15 best DUF2188 94.5 4.60e-27 100.0% 98.4%
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.72 50.0 5.09e-01 73.3% 77.2%
2a6qA01 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.70 45.0 5.01e-01 100.0% 90.7%
3ocoA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.67 42.0 3.21e-01 100.0% 27.9%
3ocmB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.66 42.0 3.15e-01 100.0% 26.0%
3ctuA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.66 40.0 3.05e-01 100.0% 24.8%
2yzqA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.65 41.0 3.48e-01 100.0% 38.4%
3oi8A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.65 40.0 3.51e-01 98.3% 40.7%
2nycA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.64 40.0 3.17e-01 100.0% 29.2%
3ddjA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.64 40.0 3.14e-01 100.0% 27.9%
5iipA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.64 40.0 3.25e-01 100.0% 31.9%
3nx3A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.64 47.0 3.09e-01 78.3% 64.0%
3lv9A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.63 39.0 3.12e-01 100.0% 29.2%
4dqwA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.62 39.0 3.23e-01 100.0% 33.6%
3ddjA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.62 39.0 2.97e-01 100.0% 26.6%
2ouxA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.62 39.0 3.10e-01 100.0% 29.5%
2po3A01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.61 44.0 3.04e-01 76.7% 90.3%
3kh5A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.61 39.0 2.98e-01 100.0% 27.5%
1aj6A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.60 51.0 3.68e-01 100.0% 75.8%
3hf7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.60 38.0 3.10e-01 100.0% 30.7%
3kh5A02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.60 38.0 2.98e-01 100.0% 27.9%
2eo5A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.60 47.0 3.06e-01 85.0% 69.7%
3kzhB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.59 43.0 2.85e-01 100.0% 15.9%
2ef7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.59 37.0 2.98e-01 100.0% 30.2%
2hqyA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 47.0 3.70e-01 91.7% 85.4%
2fwrA01 3.40.1170.30 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › 0.57 42.0 4.35e-01 83.3% 96.5%
3l2bA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.57 36.0 2.96e-01 100.0% 32.5%
1vliA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 39.0 2.58e-01 73.3% 28.7%
2b30A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.57 45.0 3.34e-01 91.7% 89.1%
1c9kB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 49.0 3.56e-01 100.0% 98.9%
1zfjA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 50.0 2.93e-01 100.0% 30.3%
2uv4A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 39.0 3.04e-01 76.7% 53.1%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 43.0 2.86e-01 90.0% 98.0%
1odfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 45.0 3.02e-01 100.0% 87.5%
2afbB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 44.0 2.87e-01 100.0% 19.0%
8d3lA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.53 45.0 4.05e-01 100.0% 85.2%
2hpiA01 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.53 46.0 3.00e-01 100.0% 48.0%
3fk9A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 39.0 3.05e-01 85.0% 56.9%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.52 44.0 4.05e-01 100.0% 91.5%
3dciA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.52 44.0 3.14e-01 100.0% 78.7%
1cecA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 45.0 2.84e-01 100.0% 35.6%
2inbA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.51 46.0 3.57e-01 100.0% 51.6%
7cr6D01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.51 42.0 3.94e-01 100.0% 92.7%
6gnaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 36.0 2.71e-01 100.0% 26.6%
7mi4A02 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.51 41.0 3.95e-01 96.7% 98.6%
4b9bA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.50 44.0 2.84e-01 100.0% 29.6%
3lfjB00 3.40.35.10 Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component 0.50 42.0 3.17e-01 100.0% 90.4%
1q0sA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 42.0 3.28e-01 100.0% 50.7%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4992153 4076.2.1.0 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like 0.85 58.0 5.46e-01 70.0% 90.0%
1867285 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.73 46.0 3.87e-01 100.0% 38.4%
134360 252.2.1.3 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 0.73 51.0 5.02e-01 73.3% 68.8%
4122425 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.70 44.0 3.31e-01 100.0% 26.2%
3272723 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.69 44.0 3.14e-01 100.0% 22.4%
2124247 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.69 44.0 3.40e-01 100.0% 28.3%
4950216 4100.1.1.3 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.68 45.0 4.88e-01 70.0% 85.4%
3299595 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.68 45.0 3.26e-01 100.0% 24.1%
3258363 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.68 43.0 3.25e-01 100.0% 26.9%
4980356 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.68 42.0 3.29e-01 100.0% 29.2%
5064254 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.67 42.0 3.31e-01 100.0% 29.6%
3270127 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.67 42.0 3.12e-01 100.0% 24.5%
5078398 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.67 42.0 3.16e-01 100.0% 25.3%
3264654 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.66 41.0 2.99e-01 100.0% 21.7%
3254508 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.65 41.0 3.14e-01 100.0% 27.1%
5074808 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.65 41.0 3.08e-01 100.0% 24.7%
4956066 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.65 41.0 3.16e-01 100.0% 28.1%
3577325 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.65 41.0 2.52e-01 100.0% 10.6%
5057336 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.64 40.0 3.18e-01 100.0% 29.5%
3172493 242.3.1.1 ↗ a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I 0.64 55.0 4.50e-01 100.0% 72.5%
4133743 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.64 40.0 2.92e-01 100.0% 22.4%
4994427 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.64 40.0 3.16e-01 100.0% 29.2%
5068759 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.64 40.0 3.04e-01 100.0% 25.3%
5075488 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.63 50.0 4.87e-01 88.3% 92.6%
5080691 244.4.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit 0.63 54.0 4.57e-01 100.0% 90.7%
5042830 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.63 40.0 3.09e-01 100.0% 28.1%
4400393 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.63 40.0 3.19e-01 100.0% 30.9%
3386888 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.63 39.0 3.34e-01 100.0% 36.2%
3939309 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.63 39.0 2.97e-01 100.0% 24.8%
1087109 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.63 40.0 4.09e-01 100.0% 67.9%
5082776 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.63 39.0 3.11e-01 100.0% 29.2%
5041682 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.62 39.0 3.56e-01 100.0% 44.7%
4646567 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.62 39.0 2.98e-01 100.0% 25.3%
3279455 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.62 39.0 3.01e-01 100.0% 26.2%
3263168 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.62 39.0 3.04e-01 100.0% 29.2%
4981935 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 50.0 4.27e-01 96.7% 98.2%
4962038 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.62 39.0 3.08e-01 100.0% 29.2%
4011549 213.1.1.27 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.62 50.0 3.36e-01 90.0% 88.1%
4431929 4100.1.1.4 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › UPF0150 0.61 43.0 4.24e-01 73.3% 84.6%
4980646 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.61 39.0 2.91e-01 100.0% 24.5%
4933559 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.61 39.0 3.18e-01 100.0% 33.0%
3913819 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.61 39.0 2.97e-01 100.0% 26.2%
4023526 213.1.1.72 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_10 0.61 49.0 3.42e-01 91.7% 90.9%
5057784 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 49.0 4.24e-01 91.7% 98.9%
3692846 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.60 48.0 3.29e-01 88.3% 90.9%
4634689 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.59 40.0 3.94e-01 70.0% 66.2%
3396717 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 47.0 4.11e-01 96.7% 73.7%
4524600 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.56 46.0 2.92e-01 91.7% 43.3%
4438458 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.55 49.0 3.06e-01 100.0% 20.3%
4969332 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.54 46.0 4.65e-01 100.0% 96.7%
3649047 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.54 45.0 2.82e-01 100.0% 18.2%
4948121 7592.1.1.0 ↗ a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains 0.54 44.0 3.64e-01 98.3% 96.8%
4964781 2006.1.6.15 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.54 46.0 3.11e-01 100.0% 25.1%
1040605 101.1.2.77 ↗ alpha arrays › HTH › HTH › winged helix domain › ESCRT-II 0.53 38.0 3.60e-01 96.7% 63.0%
5055025 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.53 38.0 2.92e-01 78.3% 40.6%
4566118 2002.1.1.64 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_14 0.53 45.0 2.71e-01 96.7% 46.4%
2798015 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.53 44.0 2.80e-01 100.0% 20.7%
3283240 2006.1.4.4 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.53 44.0 3.17e-01 98.3% 87.7%
4495021 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.52 44.0 2.80e-01 100.0% 22.5%
3632795 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.52 42.0 3.48e-01 90.0% 56.4%
4016778 2004.1.1.43 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SRP54 0.51 45.0 2.90e-01 100.0% 27.9%
4013454 2003.6.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like 0.51 42.0 2.65e-01 100.0% 50.9%
11040 2008.1.1.32 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › XisH 0.50 44.0 3.48e-01 100.0% 51.2%
4933618 2006.1.4.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 0.50 44.0 3.53e-01 100.0% 87.2%
4649506 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.50 41.0 2.71e-01 100.0% 23.8%