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MK448393.1__QBX08518.1__JavanS276_0015__00004

Bact-Vir

MK448393.1__QBX08518.1__JavanS276_0015__00004

Identity

Accession:
MK448393 ↗
Kingdom:
phage

Quality

93.0 mean pLDDT

Taxonomy

Streptococcus_satellite_phage_Javan276

TaxID: 2558600

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-136
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kf6A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.78 51.0 4.74e-01 100.0% 54.4%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 58.0 6.09e-01 100.0% 88.2%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 24.0 3.10e-01 100.0% 48.5%
1fguB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 54.0 5.59e-01 100.0% 85.7%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 58.0 5.97e-01 100.0% 93.3%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 41.0 4.55e-01 100.0% 74.4%
1iyjB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 48.0 4.77e-01 100.0% 72.8%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.59 35.0 3.38e-01 100.0% 49.6%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 25.0 2.76e-01 98.2% 46.8%
6kghA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 36.0 3.27e-01 74.8% 81.8%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5052424 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.77 56.0 5.16e-01 100.0% 60.0%
3375524 2.1.1.229 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.76 59.0 5.78e-01 100.0% 75.0%
3303656 2.1.1.157 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB2 0.75 54.0 5.03e-01 100.0% 60.7%
4047115 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.74 59.0 6.20e-01 100.0% 93.0%
3365669 2.1.1.229 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.72 56.0 5.70e-01 100.0% 84.5%
3612666 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 57.0 5.39e-01 100.0% 73.1%
4091785 2.1.1.33 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF961 0.67 56.0 5.77e-01 100.0% 94.3%
4001702 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 51.0 5.08e-01 100.0% 80.0%
3428367 2.1.1.47 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › BRCA-2_OB3 0.64 53.0 4.67e-01 100.0% 60.1%
3655845 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 48.0 5.19e-01 100.0% 92.6%
3202297 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 53.0 4.50e-01 100.0% 55.4%
3480547 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 50.0 4.95e-01 100.0% 81.4%
3698264 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.61 56.0 4.48e-01 100.0% 54.0%
3489454 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 46.0 4.92e-01 97.3% 93.7%
3350050 2.1.1.25 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.60 51.0 4.64e-01 100.0% 69.0%
3514098 2.1.1.25 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.60 49.0 4.86e-01 100.0% 83.5%
3704723 2.1.1.25 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.59 50.0 4.85e-01 100.0% 80.0%
3417038 2.1.1.179 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REV3_N 0.59 51.0 4.89e-01 100.0% 81.6%
3693741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 28.0 3.36e-01 100.0% 68.1%
3247265 2.1.1.105 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NMD3_OB 0.58 47.0 4.27e-01 100.0% 64.7%
3496491 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 49.0 5.11e-01 100.0% 99.0%
3711372 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 52.0 4.24e-01 100.0% 64.5%
3891602 2.1.1.276 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1, REV3_N 0.54 49.0 4.64e-01 100.0% 83.8%
3679928 2.1.1.179 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REV3_N 0.53 49.0 4.63e-01 100.0% 98.5%
4623074 1.1.7.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.52 39.0 3.93e-01 77.5% 86.4%
4056773 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.52 34.0 3.83e-01 99.1% 87.1%