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MK448408.1__QBX08796.1__JavanS296_0002__00017

Bact-Vir

MK448408.1__QBX08796.1__JavanS296_0002__00017

Identity

Accession:
MK448408 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

Taxonomy

TaxID: 2558615

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-64
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gv5B01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.72 53.0 4.19e-01 79.4% 41.7%
3gy9A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.71 52.0 3.94e-01 90.5% 33.1%
1t94B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.71 50.0 4.09e-01 76.2% 46.2%
2fphX01 3.30.1370.160 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.70 51.0 4.78e-01 77.8% 71.4%
7chdE01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.69 55.0 4.10e-01 88.9% 34.3%
4b8cD02 3.30.1370.190 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.69 40.0 3.95e-01 74.6% 52.9%
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 45.0 4.28e-01 71.4% 58.1%
1yreC00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.67 58.0 4.17e-01 96.8% 42.9%
3qyfA03 1.10.10.1690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Uncharacterised CRISPR-associated protein family, UPF0236 0.61 46.0 4.72e-01 98.4% 85.2%
3qfhA01 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.61 43.0 4.26e-01 79.4% 70.8%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 53.0 4.51e-01 100.0% 71.4%
3nftA00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.60 49.0 3.31e-01 93.7% 44.7%
1jqgA01 3.30.70.340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like 0.60 44.0 3.94e-01 81.0% 54.9%
5lt5A02 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.60 47.0 4.11e-01 88.9% 78.4%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 4.34e-01 98.4% 71.3%
3f56A01 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.59 46.0 3.98e-01 88.9% 78.3%
1hi9A02 3.30.1360.130 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Dipeptide transport protein 0.59 47.0 4.45e-01 87.3% 72.4%
2y3mA02 3.30.1370.130 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.59 29.0 3.13e-01 100.0% 53.6%
6k2eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 39.0 3.88e-01 81.0% 64.7%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 4.54e-01 100.0% 74.2%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 4.59e-01 100.0% 83.3%
1a7jA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 47.0 3.06e-01 87.3% 87.8%
3to7A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 4.53e-01 100.0% 80.2%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 4.37e-01 98.4% 76.5%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 49.0 3.79e-01 100.0% 43.0%
2pq0A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.57 40.0 3.57e-01 77.8% 90.0%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 41.0 3.66e-01 79.4% 58.1%
2fbkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 48.0 3.69e-01 100.0% 43.6%
8bypX01 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.56 46.0 2.91e-01 100.0% 27.2%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 4.27e-01 96.8% 87.8%
4y4mC00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 46.0 3.18e-01 100.0% 34.9%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 47.0 4.18e-01 100.0% 68.4%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 4.21e-01 96.8% 90.9%
1rp0A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 45.0 3.18e-01 100.0% 39.0%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 3.99e-01 100.0% 76.2%
2h6bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.96e-01 96.8% 75.0%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 4.03e-01 100.0% 81.1%
3s6gA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 38.0 3.02e-01 79.4% 52.1%
6npoA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 35.0 2.67e-01 81.0% 26.3%
3tzyA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.52 36.0 3.57e-01 74.6% 68.6%
2ctfA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 38.0 3.35e-01 81.0% 61.8%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.90e-01 92.1% 85.7%
2wb6A00 3.90.1150.90 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.52 43.0 3.68e-01 100.0% 84.2%
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.52 40.0 3.47e-01 85.7% 89.1%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.79e-01 98.4% 70.7%
3wrwA02 3.40.50.12030 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein family UPF0261, NC domain 0.51 43.0 3.05e-01 98.4% 98.2%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.51 35.0 3.43e-01 74.6% 82.4%
3b02A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.86e-01 98.4% 88.2%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3347409 328.7.1.0 a+b two layers › IF3-like › Smr domain › Smr domain 0.68 58.0 4.73e-01 98.4% 59.2%
5074705 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 50.0 4.75e-01 100.0% 68.0%
3601826 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.67 58.0 4.14e-01 100.0% 44.6%
3454929 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.66 58.0 4.46e-01 100.0% 63.4%
4068317 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.66 42.0 4.43e-01 71.4% 74.5%
3339524 328.7.1.0 a+b two layers › IF3-like › Smr domain › Smr domain 0.64 53.0 4.62e-01 98.4% 78.1%
4094763 304.60.1.8 a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10, PF27436 0.64 47.0 3.56e-01 81.0% 70.6%
3290858 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 55.0 4.69e-01 98.4% 61.0%
3600122 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.63 51.0 3.93e-01 100.0% 38.7%
3443035 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 56.0 4.74e-01 100.0% 76.2%
3356805 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.62 54.0 3.64e-01 98.4% 32.3%
3296161 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 53.0 4.26e-01 98.4% 61.5%
5012625 7535.1.1.1 a/b three-layered sandwiches › Dipeptide transport protein › Dipeptide transport protein › Dipeptide transport protein › Peptidase_M55 0.61 49.0 3.25e-01 90.5% 64.7%
5070038 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 48.0 4.15e-01 98.4% 57.0%
5065568 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 51.0 4.09e-01 100.0% 69.2%
3690887 101.1.9.87 alpha arrays › HTH › HTH › Putative DNA-binding domain › PF26118 0.58 37.0 3.93e-01 74.6% 74.5%
5073681 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 50.0 4.21e-01 100.0% 56.5%
5043432 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.58 40.0 3.65e-01 81.0% 51.1%
4227814 101.1.2.546 alpha arrays › HTH › HTH › winged helix domain › Methyltransf_2 0.58 48.0 3.05e-01 100.0% 33.7%
4933806 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 50.0 3.75e-01 100.0% 70.0%
None 0.58 48.0 3.22e-01 100.0% 30.2%
None 0.58 48.0 3.28e-01 100.0% 32.2%
4889364 304.56.1.3 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › Cas3_I-F_Cas2 0.58 39.0 3.21e-01 81.0% 37.0%
3732445 304.4.1.11 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD 0.58 41.0 3.53e-01 77.8% 80.0%
4941141 2003.1.2.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Thi4 0.57 48.0 3.23e-01 98.4% 32.2%
4977020 101.1.2.222 alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.57 48.0 4.54e-01 98.4% 80.0%
4970959 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 4.65e-01 96.8% 98.6%
3917491 331.4.1.5 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1_BRSK 0.57 41.0 3.31e-01 77.8% 80.7%
4990272 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.46e-01 96.8% 93.3%
None 0.57 48.0 3.27e-01 100.0% 33.5%
4936264 2003.1.2.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Thi4 0.57 46.0 3.13e-01 92.1% 90.9%
None 0.57 48.0 3.36e-01 100.0% 37.9%
4998335 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 4.55e-01 100.0% 94.7%
None 0.57 48.0 3.18e-01 100.0% 30.7%
3177037 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.57 40.0 3.54e-01 74.6% 78.9%
None 0.57 47.0 3.16e-01 98.4% 31.9%
4316044 101.1.2.388 alpha arrays › HTH › HTH › winged helix domain › YjhX_toxin 0.56 48.0 4.35e-01 100.0% 85.6%
4997960 242.4.1.0 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain 0.56 46.0 4.20e-01 100.0% 91.6%
None 0.56 46.0 3.21e-01 98.4% 34.9%
None 0.56 46.0 3.18e-01 98.4% 34.0%
None 0.56 47.0 3.24e-01 100.0% 35.2%
None 0.56 46.0 3.09e-01 98.4% 31.4%
None 0.55 45.0 3.04e-01 98.4% 29.6%
4933548 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.55 44.0 4.07e-01 87.3% 75.0%
None 0.55 46.0 3.12e-01 98.4% 33.0%
4015761 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 48.0 4.22e-01 100.0% 77.9%
3529465 101.1.9.4 alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.55 44.0 3.75e-01 88.9% 87.6%
4012218 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 45.0 3.08e-01 98.4% 33.7%
None 0.55 45.0 3.01e-01 100.0% 29.8%
3183588 12.1.1.116 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Tfb2 0.54 45.0 3.97e-01 96.8% 95.0%
None 0.54 45.0 3.07e-01 98.4% 33.1%
137823 2003.1.2.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Thi4 0.54 44.0 2.94e-01 98.4% 29.3%
224405 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.53 43.0 4.10e-01 98.4% 92.7%
5056734 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 46.0 3.81e-01 98.4% 79.1%
3798287 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.53 40.0 3.58e-01 84.1% 93.7%
4191632 2003.1.2.38 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lycopene_cycl 0.53 42.0 2.97e-01 98.4% 30.4%
3653637 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.52 39.0 2.69e-01 85.7% 79.2%
3602755 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.52 44.0 4.19e-01 98.4% 82.7%
3332887 101.1.2.86 alpha arrays › HTH › HTH › winged helix domain › SMC_Nse1 0.51 42.0 3.57e-01 100.0% 79.2%
3893451 101.1.9.4 alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.51 35.0 2.97e-01 71.4% 51.4%
3888996 101.1.9.4 alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.51 41.0 3.59e-01 88.9% 93.7%
146926 3066.1.1.0 0.51 41.0 3.74e-01 98.4% 67.4%
3879225 213.1.1.11 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › NAT 0.50 37.0 2.93e-01 82.5% 52.0%
3280861 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 42.0 3.54e-01 100.0% 53.3%