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MK448411.1__QBX08869.1__JavanS299_0018__00018

Bact-Vir

MK448411.1__QBX08869.1__JavanS299_0018__00018

Identity

Accession:
MK448411 ↗
Kingdom:
phage

Quality

80.6 mean pLDDT

Taxonomy

Streptococcus_satellite_phage_Javan299

TaxID: 2558618

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 43-97
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.68 51.0 3.37e-01 83.6% 48.8%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.64 48.0 3.26e-01 85.5% 49.2%
2r6iA01 3.30.2180.10 Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like 0.60 44.0 3.68e-01 96.4% 45.8%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.56 31.0 3.58e-01 90.9% 84.8%
2khoA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 45.0 3.44e-01 100.0% 55.3%
6ioyC02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 46.0 3.22e-01 100.0% 86.6%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.54 46.0 3.73e-01 96.4% 61.1%
1fjrA01 2.30.160.11 Mainly Beta › Roll › Methuselah Ectodomain; Chain: A, domain 1 › 0.54 40.0 3.86e-01 80.0% 77.8%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 35.0 3.51e-01 100.0% 65.5%
4la9A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 35.0 2.75e-01 72.7% 29.2%
1qhlA00 3.40.1140.10 Alpha Beta › 3-Layer(aba) Sandwich › N-terminal domain of mukB › 0.52 43.0 3.02e-01 100.0% 97.5%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.58e-01 100.0% 59.1%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.72e-01 100.0% 59.6%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4126330 101.1.9.33 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF536 0.70 46.0 3.42e-01 96.4% 26.2%
None — 0.69 48.0 3.78e-01 76.4% 48.8%
3989255 101.1.9.141 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF536, HTH_24 0.66 46.0 3.33e-01 98.2% 25.6%
4981968 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 41.0 4.33e-01 90.9% 93.3%
3588934 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.58 42.0 4.06e-01 98.2% 67.7%
3594753 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 43.0 2.70e-01 96.4% 13.8%
4996627 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.58 48.0 3.46e-01 100.0% 82.6%
3833607 376.1.6.9 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › PF26200 0.58 38.0 3.76e-01 89.1% 61.7%
4965319 241.11.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › Luciferase 0.56 46.0 3.53e-01 96.4% 76.3%
4601385 4167.1.1.1 ↗ beta complex topology › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › LlgE_F_G_D1 0.55 41.0 3.34e-01 83.6% 92.5%
3449773 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.55 39.0 2.53e-01 80.0% 77.9%
5366 304.48.1.15 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3 0.54 44.0 2.70e-01 96.4% 75.1%
3827052 1.1.1.9 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C 0.53 41.0 2.87e-01 92.7% 55.1%
4933326 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.53 42.0 3.80e-01 98.2% 85.2%
3707090 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 36.0 3.35e-01 74.5% 73.3%
3887830 193.1.1.33 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH_CAMSAP2_N 0.52 42.0 3.24e-01 96.4% 71.7%
5030872 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 41.0 3.25e-01 92.7% 58.5%
1117622 330.1.1.7 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsRBD2 0.52 39.0 3.34e-01 87.3% 48.5%
4946594 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.54e-01 94.5% 61.0%
3964608 220.1.1.104 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Cpta_toxin 0.52 37.0 3.56e-01 81.8% 65.7%
3179147 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.51 30.0 2.63e-01 98.2% 31.8%
4196593 601.50.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Flagellar cap protein FliD helical bundle domain › Flagellar cap protein FliD helical bundle domain › FliD_C 0.50 39.0 2.79e-01 98.2% 26.7%