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MK448417.1__QBX08969.1__JavanS304_0004__00004
Bact-VirMK448417.1__QBX08969.1__JavanS304_0004__00004
Identity
- Accession:
- MK448417 ↗
- Kingdom:
- phage
Quality
88.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-68
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1f2eA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.63 | 48.0 | 4.18e-01 | 82.4% | 66.0% |
| 5x8tT00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.58 | 46.0 | 3.61e-01 | 86.8% | 50.7% |
| 2b25A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 44.0 | 3.23e-01 | 82.4% | 98.9% |
| 6i3mE01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.56 | 41.0 | 3.29e-01 | 79.4% | 43.8% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4460550 | 221.4.1.6 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX-like | 0.59 | 44.0 | 3.26e-01 | 80.9% | 58.4% |
| 3400497 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.59 | 44.0 | 2.84e-01 | 77.9% | 27.7% |
| 4785120 | 192.3.1.0 ↗ | alpha bundles › Long alpha-hairpin › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Fe,Mn superoxide dismutase (SOD), N-terminal domain | 0.58 | 41.0 | 3.61e-01 | 73.5% | 84.7% |
| 5003516 | 7577.1.1.3 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_5 | 0.58 | 45.0 | 2.80e-01 | 83.8% | 84.2% |
| 3302126 | 109.3.1.164 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 | 0.58 | 45.0 | 3.03e-01 | 85.3% | 43.6% |
| 4140519 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.56 | 38.0 | 3.31e-01 | 70.6% | 76.2% |
| 4427696 | 3844.2.1.1 ↗ | a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG | 0.53 | 41.0 | 2.79e-01 | 85.3% | 72.0% |
| 4940271 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.52 | 36.0 | 3.39e-01 | 76.5% | 56.7% |