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MK448418.1__QBX08990.1__JavanS305_0007__00007

Bact-Vir

MK448418.1__QBX08990.1__JavanS305_0007__00007

Identity

Accession:
MK448418 ↗
Kingdom:
phage

Quality

92.6 mean pLDDT

Taxonomy

Streptococcus_satellite_phage_Javan305

TaxID: 2558625

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-57
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hz4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.83 71.0 5.22e-01 95.7% 80.0%
1w4vA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.78 62.0 4.77e-01 100.0% 39.1%
3fhkA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.76 63.0 4.82e-01 100.0% 42.5%
1nw2A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.73 59.0 4.67e-01 95.7% 90.5%
3oxnA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.62 45.0 3.46e-01 80.9% 33.0%
6gvdA02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 39.0 2.43e-01 78.7% 89.2%
4mt1A07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.53 36.0 2.93e-01 72.3% 72.5%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.63e-01 95.7% 71.6%
3onhA01 3.10.290.20 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 0.51 41.0 3.15e-01 89.4% 84.7%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.51 34.0 2.66e-01 70.2% 38.7%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 33.0 3.01e-01 76.6% 44.4%
2lfvA00 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.50 42.0 3.33e-01 100.0% 44.3%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
135450 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.83 71.0 5.22e-01 95.7% 80.0%
5007526 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.81 66.0 5.48e-01 100.0% 51.8%
4973538 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.80 62.0 4.88e-01 100.0% 40.8%
3502426 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.80 67.0 5.51e-01 100.0% 51.8%
4023926 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.80 67.0 4.78e-01 95.7% 72.1%
4951497 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.80 64.0 5.32e-01 100.0% 50.6%
3574325 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.78 62.0 5.01e-01 100.0% 45.3%
3512115 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.77 62.0 5.65e-01 100.0% 67.7%
3468511 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.74 58.0 5.60e-01 100.0% 78.2%
3781695 2485.1.1.87 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › UBX7_N 0.73 58.0 4.47e-01 100.0% 37.5%
3591875 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.72 57.0 4.72e-01 100.0% 47.8%
3671153 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.72 56.0 4.66e-01 100.0% 47.8%
3656721 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.70 58.0 5.14e-01 100.0% 69.3%
3504833 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.70 56.0 5.00e-01 100.0% 61.3%
2524015 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.69 53.0 4.47e-01 100.0% 48.3%
3685976 2485.1.1.87 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › UBX7_N 0.69 55.0 4.22e-01 100.0% 36.8%
3588855 2485.1.1.80 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DUF6568 0.68 57.0 5.12e-01 100.0% 75.7%
3175799 2485.1.1.87 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › UBX7_N 0.68 57.0 4.09e-01 100.0% 31.3%
3958546 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.67 54.0 5.09e-01 100.0% 75.0%
3576039 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.66 57.0 4.77e-01 100.0% 55.3%
3996858 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.65 50.0 4.67e-01 100.0% 67.7%
3995127 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.62 49.0 4.43e-01 100.0% 61.3%
4018202 325.1.1.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like 0.56 42.0 3.22e-01 95.7% 73.8%
1759643 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.53 34.0 2.43e-01 80.9% 21.8%
4953042 2.14.1.1 ↗ beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC 0.52 39.0 3.53e-01 95.7% 70.0%