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MK448426.1__QBX09111.1__JavanS319_0002__00002

Bact-Vir

MK448426.1__QBX09111.1__JavanS319_0002__00002

Identity

Accession:
MK448426 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

Taxonomy

TaxID: 2558633

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-142
PDB
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.69 46.0 5.22e-01 76.3% 91.1%
1wi9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 28.0 4.18e-01 71.1% 93.1%
1qbjC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 29.0 4.00e-01 70.4% 83.3%
4p9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 28.0 3.83e-01 72.6% 82.1%
3edpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 28.0 3.69e-01 73.3% 73.7%
1s3jA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 31.0 4.35e-01 75.6% 100.0%
2ia2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 28.0 3.88e-01 88.9% 83.8%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 29.0 4.12e-01 75.6% 95.2%
2qlzA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 27.0 3.92e-01 73.3% 88.9%
2l2dA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.61 27.0 3.53e-01 76.3% 74.0%
3r4kB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 28.0 3.99e-01 75.6% 93.7%
5f7qC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 31.0 4.11e-01 72.6% 92.9%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 28.0 3.62e-01 74.8% 76.3%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.59 34.0 3.67e-01 71.9% 64.5%
4yo2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 27.0 3.58e-01 72.6% 80.3%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 29.0 3.99e-01 75.6% 97.0%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 30.0 3.94e-01 91.9% 93.0%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 31.0 3.84e-01 74.1% 83.5%
1biaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 27.0 3.84e-01 75.6% 95.3%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 29.0 3.67e-01 74.8% 83.7%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 35.0 3.90e-01 95.6% 79.8%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 31.0 3.71e-01 94.1% 78.7%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 30.0 3.54e-01 74.8% 72.4%
2a61B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 35.0 3.57e-01 100.0% 62.0%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 30.0 4.00e-01 94.1% 100.0%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 30.0 3.63e-01 93.3% 78.9%
3h0dA01 3.30.56.130 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Transcriptional regulator CtsR, winged HTH domain 0.55 28.0 3.61e-01 73.3% 88.7%
3mczA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 29.0 3.65e-01 93.3% 84.1%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 29.0 3.79e-01 91.9% 94.5%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 30.0 3.79e-01 76.3% 91.0%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 33.0 3.95e-01 95.6% 94.0%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 33.0 4.02e-01 96.3% 96.5%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 33.0 3.93e-01 97.8% 90.3%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 36.0 3.58e-01 98.5% 65.5%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 35.0 3.48e-01 100.0% 63.8%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 30.0 3.71e-01 88.9% 92.7%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 34.0 3.88e-01 98.5% 90.0%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 33.0 3.77e-01 95.6% 87.1%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 33.0 3.89e-01 94.8% 97.8%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 36.0 3.56e-01 97.0% 68.8%
5o60I00 3.30.70.1730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain 0.50 36.0 3.69e-01 73.3% 87.3%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3983963 101.1.9.41 alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N 0.86 61.0 6.95e-01 73.3% 94.3%
3285399 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.79 31.0 5.15e-01 70.4% 100.0%
3984393 101.1.9.88 alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha 0.79 58.0 6.39e-01 85.2% 92.7%
3953197 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.78 34.0 4.12e-01 77.0% 61.1%
3978692 101.1.9.143 alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.73 60.0 5.83e-01 87.4% 77.3%
4546946 101.1.9.25 alpha arrays › HTH › HTH › Putative DNA-binding domain › INI1_DNA-bd 0.72 46.0 4.96e-01 71.9% 75.7%
3944712 101.1.9.40 alpha arrays › HTH › HTH › Putative DNA-binding domain › P22_AR_N 0.72 54.0 6.02e-01 85.2% 100.0%
3179612 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.69 36.0 4.69e-01 74.8% 94.3%
3782429 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.69 46.0 5.16e-01 74.1% 90.0%
3942751 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.69 40.0 4.28e-01 77.8% 65.0%
4101677 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.67 37.0 3.77e-01 71.9% 55.6%
3947416 101.1.9.88 alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha 0.66 46.0 5.11e-01 79.3% 89.1%
4954530 101.1.9.143 alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.66 52.0 5.64e-01 83.7% 99.1%
5026860 101.1.2.44 alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S25 0.61 30.0 3.85e-01 75.6% 82.4%
3613378 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 32.0 4.26e-01 73.3% 94.6%
3276386 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 31.0 4.06e-01 74.8% 94.3%
3986225 101.1.9.32 alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.59 42.0 3.63e-01 73.3% 49.3%
3250568 101.1.2.151 alpha arrays › HTH › HTH › winged helix domain › COR 0.57 36.0 4.25e-01 75.6% 95.6%
1266087 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.56 33.0 3.82e-01 97.0% 79.2%
5078416 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.55 27.0 3.66e-01 73.3% 93.8%
4957731 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.54 37.0 3.57e-01 96.3% 61.3%
3284686 101.1.9.84 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 0.54 39.0 3.21e-01 74.1% 99.1%
4943002 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 29.0 2.59e-01 94.8% 36.9%
4094763 304.60.1.8 a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10, PF27436 0.53 40.0 3.85e-01 80.7% 78.1%
4259425 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 41.0 4.36e-01 88.9% 94.2%
3954543 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.53 34.0 3.41e-01 94.8% 61.5%
5054787 304.60.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 0.52 37.0 3.32e-01 74.1% 58.4%
3588023 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.51 29.0 3.66e-01 89.6% 92.5%
4941744 304.60.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 0.51 36.0 3.23e-01 72.6% 56.5%
3587571 101.1.2.93 alpha arrays › HTH › HTH › winged helix domain › HTH_Mga 0.51 25.0 3.34e-01 71.1% 87.1%
5068288 304.60.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 0.51 38.0 3.59e-01 80.0% 87.6%
3590781 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.50 32.0 3.80e-01 95.6% 95.6%
3990034 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.50 30.0 3.61e-01 91.1% 88.9%
3647004 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.50 33.0 3.35e-01 90.4% 66.9%
D2 high residues 149-333
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gmqA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.58 27.0 3.75e-01 72.4% 88.0%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.56 22.0 2.95e-01 85.4% 65.2%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.53 27.0 3.41e-01 78.9% 77.6%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.52 25.0 2.74e-01 75.7% 54.0%
1rzhL01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.52 28.0 3.03e-01 76.8% 58.9%
1y4cA03 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.52 22.0 2.80e-01 78.9% 62.8%
3vprA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 27.0 2.99e-01 74.6% 61.4%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.51 39.0 3.03e-01 78.9% 99.8%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5080933 159.1.2.0 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.84 57.0 6.81e-01 71.4% 97.7%
3965225 159.1.2.30 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PF29372 0.79 60.0 6.74e-01 93.5% 98.6%
4958350 1075.5.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.54 40.0 3.94e-01 76.2% 95.6%
3958574 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.53 24.0 2.55e-01 76.2% 46.7%
3974261 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.52 38.0 3.85e-01 97.8% 74.2%
3926987 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.52 41.0 3.90e-01 98.4% 70.7%
3601971 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.51 40.0 4.28e-01 84.3% 93.3%