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MK448444.1__QBX09472.1__JavanS343_0014__00014
Bact-VirMK448444.1__QBX09472.1__JavanS343_0014__00014
Identity
- Accession:
- MK448444 ↗
- Kingdom:
- phage
Quality
86.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-78
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bvxA02 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.74 | 52.0 | 4.45e-01 | 71.6% | 71.2% |
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.74 | 51.0 | 5.16e-01 | 71.6% | 88.0% |
| 2qffA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.73 | 51.0 | 5.11e-01 | 71.6% | 89.2% |
| 5zw7A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.72 | 50.0 | 3.92e-01 | 71.6% | 59.9% |
| 1avoB00 | 1.20.120.180 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain | 0.70 | 48.0 | 3.88e-01 | 71.6% | 82.9% |
| 1siqA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.69 | 47.0 | 3.71e-01 | 71.6% | 60.6% |
| 1lp1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.66 | 43.0 | 4.78e-01 | 73.0% | 90.9% |
| 2cgqA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.65 | 38.0 | 3.89e-01 | 87.8% | 58.1% |
| 7x0fB01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.62 | 36.0 | 3.69e-01 | 86.5% | 58.9% |
| 2eqoA01 | 1.10.418.50 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Microtubule-binding protein MIP-T3 | 0.61 | 49.0 | 4.16e-01 | 90.5% | 77.1% |
| 1dk8A02 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.59 | 41.0 | 3.93e-01 | 71.6% | 64.7% |
| 5es8A03 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.58 | 35.0 | 3.57e-01 | 86.5% | 59.7% |
| 2fnaA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.57 | 39.0 | 3.93e-01 | 82.4% | 69.7% |
| 2c9oB03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.57 | 42.0 | 4.07e-01 | 91.9% | 69.9% |
| 3lxrF00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.56 | 44.0 | 3.31e-01 | 85.1% | 66.3% |
| 1r6bX03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 43.0 | 4.15e-01 | 91.9% | 73.9% |
| 3uk6A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 40.0 | 3.93e-01 | 91.9% | 71.1% |
| 4ye6A01 | 1.10.8.1290 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 | 0.52 | 37.0 | 3.40e-01 | 82.4% | 54.8% |
| 1c17M00 | 1.20.120.220 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ATP synthase, F0 complex, subunit A | 0.52 | 42.0 | 3.42e-01 | 89.2% | 64.8% |
| 3kbbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 35.0 | 3.61e-01 | 93.2% | 78.6% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4034431 | 632.15.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › CompInhib_SCIN | 0.75 | 52.0 | 4.99e-01 | 71.6% | 78.6% |
| 5074956 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.70 | 48.0 | 4.74e-01 | 71.6% | 86.3% |
| 3970133 | 132.1.1.0 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) | 0.66 | 39.0 | 3.87e-01 | 87.8% | 55.0% |
| 3026397 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.66 | 36.0 | 3.53e-01 | 77.0% | 50.0% |
| 3927220 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.64 | 43.0 | 4.58e-01 | 89.2% | 80.0% |
| 4059025 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.63 | 33.0 | 3.45e-01 | 79.7% | 52.9% |
| 5074233 | 620.1.1.2 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB | 0.62 | 43.0 | 3.40e-01 | 71.6% | 36.1% |
| 3994179 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.62 | 39.0 | 3.80e-01 | 98.6% | 56.5% |
| 3391380 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.61 | 43.0 | 3.74e-01 | 71.6% | 81.9% |
| 3630661 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 41.0 | 4.04e-01 | 95.9% | 70.0% |
| 3385989 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.57 | 40.0 | 4.09e-01 | 89.2% | 78.6% |
| 4023018 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.55 | 42.0 | 4.39e-01 | 82.4% | 93.8% |
| 3961879 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.55 | 38.0 | 3.48e-01 | 71.6% | 74.7% |
| 3716218 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.54 | 37.0 | 3.30e-01 | 70.3% | 78.0% |
| 3239087 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.54 | 40.0 | 3.53e-01 | 81.1% | 96.5% |
| 3286176 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.54 | 37.0 | 3.55e-01 | 71.6% | 83.5% |
| 3244102 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.51 | 35.0 | 3.15e-01 | 73.0% | 90.0% |
| 3800176 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.51 | 38.0 | 3.74e-01 | 85.1% | 87.1% |