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MK448453.1__QBX09615.1__JavanS360_0002__00020

Bact-Vir

MK448453.1__QBX09615.1__JavanS360_0002__00020

Identity

Accession:
MK448453 ↗
Kingdom:
phage

Quality

70.8 mean pLDDT

Taxonomy

Streptococcus_satellite_phage_Javan360

TaxID: 2558660

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 53-146
PDB
Domain cluster: rep: ON107264.1__UOX38256.1__X__00118__D153-237
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01610.24 best DDE_Tnp_ISL3 29.6 8.70e-07 80.8% 28.3%
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8b0qA01 3.30.420.340 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › UvrC, RNAse H endonuclease domain 0.66 59.0 4.85e-01 100.0% 80.7%
4h0pA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 60.0 4.59e-01 100.0% 95.1%
2k7iA01 3.30.160.160 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like 0.64 34.0 4.46e-01 76.6% 100.0%
2w35A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.64 57.0 4.37e-01 100.0% 75.8%
3ga2A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.64 57.0 4.27e-01 100.0% 73.7%
3f2kB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 54.0 4.39e-01 94.7% 83.6%
4ifeA02 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.63 56.0 4.24e-01 100.0% 49.3%
6d92A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 55.0 4.14e-01 100.0% 82.0%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 33.0 2.99e-01 76.6% 36.4%
1ilyA00 3.30.420.100 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.62 47.0 4.78e-01 79.8% 98.9%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 32.0 2.91e-01 77.7% 34.6%
1asuA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 55.0 4.61e-01 100.0% 58.0%
2jwkA00 3.30.420.270 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.60 43.0 4.72e-01 79.8% 95.9%
2g7zA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.57 50.0 4.65e-01 100.0% 85.0%
1mgpA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.57 49.0 4.59e-01 100.0% 83.5%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.56 50.0 4.68e-01 97.9% 83.3%
5m1pB00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.56 50.0 4.04e-01 100.0% 77.2%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.56 38.0 3.63e-01 70.2% 72.6%
3jr7A03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.56 48.0 4.50e-01 100.0% 91.1%
3obyA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.56 50.0 4.79e-01 100.0% 89.9%
3h5kA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.55 36.0 3.00e-01 71.3% 36.2%
1pzxA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.54 46.0 4.33e-01 100.0% 82.0%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 39.0 3.25e-01 75.5% 79.5%
1mg2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 3.03e-01 100.0% 76.4%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 3.19e-01 100.0% 89.4%
1d8hA00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.51 37.0 2.65e-01 76.6% 38.9%
1sqhA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 35.0 3.22e-01 73.4% 79.4%
1e2rA02 2.140.10.20 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 0.50 45.0 2.90e-01 100.0% 84.7%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989057 2484.1.1.102 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 0.87 71.0 6.34e-01 100.0% 64.0%
3990109 2484.1.1.102 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 0.84 81.0 6.97e-01 100.0% 95.6%
3953103 2484.1.1.102 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 0.84 74.0 6.19e-01 100.0% 58.4%
4032740 2484.1.1.102 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 0.80 76.0 5.45e-01 100.0% 94.2%
3520949 2484.1.1.102 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 0.79 75.0 6.25e-01 100.0% 68.7%
4155925 2484.1.1.102 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 0.78 74.0 6.23e-01 100.0% 67.6%
3989022 2484.1.1.102 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 0.76 54.0 6.12e-01 75.5% 98.6%
3165222 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.75 56.0 5.88e-01 78.7% 96.5%
3986085 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.71 53.0 5.36e-01 78.7% 86.3%
3278039 2484.1.1.102 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 0.71 66.0 4.93e-01 100.0% 91.8%
4952918 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 59.0 6.05e-01 100.0% 93.3%
3959120 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 53.0 5.57e-01 79.8% 96.5%
4968414 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 63.0 4.98e-01 100.0% 52.4%
3937267 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.66 57.0 4.51e-01 100.0% 45.6%
3939670 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.65 59.0 4.74e-01 100.0% 52.6%
3928301 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 58.0 4.77e-01 100.0% 54.1%
3170080 2484.2.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.65 44.0 4.43e-01 100.0% 68.4%
3504015 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 51.0 5.34e-01 85.1% 94.1%
3940128 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 56.0 4.42e-01 100.0% 46.2%
3216765 2484.1.1.297 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3, PF29688 0.64 57.0 4.57e-01 100.0% 51.1%
4009283 2004.1.1.196 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.63 51.0 4.25e-01 89.4% 64.1%
5082827 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 55.0 4.31e-01 100.0% 79.5%
4392478 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 50.0 4.95e-01 100.0% 82.0%
3700143 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.61 49.0 4.03e-01 100.0% 47.6%
3286459 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 54.0 4.33e-01 100.0% 75.9%
3706768 3407.1.1.0 ↗ mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.61 56.0 4.92e-01 100.0% 73.3%
3285777 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 53.0 4.49e-01 97.9% 98.1%
5074822 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 48.0 4.40e-01 90.4% 96.8%
4521118 2484.1.1.41 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.58 51.0 4.06e-01 100.0% 94.5%
3967664 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 42.0 4.21e-01 76.6% 95.8%
4026478 2004.1.1.45 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MutS_V 0.58 43.0 2.53e-01 100.0% 9.2%
1144832 2484.1.1.63 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF3822 0.57 50.0 4.93e-01 96.8% 94.0%
3618833 2484.8.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) 0.57 50.0 3.78e-01 100.0% 90.8%
5047317 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 40.0 4.15e-01 74.5% 97.6%
4108476 2484.1.1.10 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.56 47.0 4.53e-01 98.9% 80.0%
3955489 2484.1.1.211 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB 0.56 50.0 3.87e-01 100.0% 92.9%
4027467 306.3.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.56 38.0 3.74e-01 71.3% 91.4%
4034394 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 44.0 4.17e-01 98.9% 71.8%
3382554 2484.1.1.60 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_E_G 0.56 47.0 4.56e-01 100.0% 85.7%
4990438 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 48.0 4.43e-01 100.0% 91.2%
3231587 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 37.0 3.81e-01 70.2% 92.2%
3333684 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 28.0 3.30e-01 77.7% 72.3%
3256010 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.54 48.0 4.03e-01 100.0% 73.9%
4948090 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 48.0 4.13e-01 100.0% 82.0%
4945439 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 48.0 4.16e-01 100.0% 82.1%
3508171 3392.1.1.1 ↗ a+b two layers › Cytoplasmic domain of BfpC › Cytoplasmic domain of BfpC › Cytoplasmic domain of BfpC › PAP_PilO 0.53 43.0 3.63e-01 96.8% 50.9%
3964950 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 40.0 3.86e-01 100.0% 70.0%
4509605 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.53 47.0 4.14e-01 100.0% 72.1%
3396717 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 37.0 3.72e-01 79.8% 73.7%
3609310 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 45.0 4.05e-01 98.9% 88.9%
4975908 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.52 44.0 3.49e-01 100.0% 90.5%
3185738 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 43.0 3.05e-01 95.7% 40.9%
3412833 220.1.1.161 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.51 36.0 3.33e-01 96.8% 56.7%
11228 2484.1.1.47 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL 0.51 44.0 3.83e-01 96.8% 98.6%
2153195 2484.5.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RVT_connect 0.51 44.0 4.12e-01 96.8% 86.1%
4054258 2484.1.1.47 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL 0.50 45.0 3.95e-01 100.0% 98.6%