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MK448456.1__QBX09670.1__JavanS365_0003__00003
Bact-VirMK448456.1__QBX09670.1__JavanS365_0003__00003
Identity
- Accession:
- MK448456 ↗
- Kingdom:
- phage
Quality
84.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-192
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08937.17 best | ThsB_TIR | 37.8 | 3.00e-09 | 55.6% | 97.0% |
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1r0sA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.68 | 41.0 | 4.82e-01 | 89.3% | 84.1% |
| 3slkA01 | 3.40.50.11460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 42.0 | 4.38e-01 | 95.7% | 78.0% |
| 1ujnA01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 39.0 | 4.19e-01 | 87.7% | 78.3% |
| 6vloD01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 52.0 | 5.01e-01 | 96.3% | 88.1% |
| 3qp9D00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 52.0 | 3.89e-01 | 98.9% | 94.5% |
| 3eywB02 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.56 | 48.0 | 5.01e-01 | 96.8% | 98.3% |
| 1gzdA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.55 | 40.0 | 4.01e-01 | 93.0% | 71.3% |
| 4i3gA02 | 3.40.50.1700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain | 0.55 | 42.0 | 4.08e-01 | 93.6% | 71.9% |
| 3e8xA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 48.0 | 4.60e-01 | 96.3% | 89.7% |
| 4my5A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.53 | 40.0 | 3.76e-01 | 95.7% | 63.6% |
| 4re2A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 45.0 | 3.38e-01 | 93.6% | 84.9% |
| 2fgyA03 | 3.30.1330.140 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Carboxysome Shell Carbonic Anhydrase, C-terminal domain | 0.52 | 32.0 | 3.85e-01 | 92.0% | 95.7% |
| 3rq1A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.52 | 43.0 | 3.96e-01 | 98.9% | 69.5% |
| 3rm5B01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 45.0 | 3.89e-01 | 95.2% | 73.2% |
| 6ve6A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 43.0 | 3.91e-01 | 90.4% | 87.9% |
| 1gowA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 44.0 | 3.29e-01 | 93.6% | 84.3% |
| 4emyA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.51 | 42.0 | 3.90e-01 | 98.9% | 69.7% |
| 2i6qA01 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.50 | 44.0 | 4.22e-01 | 95.2% | 92.2% |
| 4k7jA01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.50 | 45.0 | 4.23e-01 | 97.3% | 86.7% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5029149 | 2007.15.1.17 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › ThsB_TIR | 0.83 | 54.0 | 6.56e-01 | 93.0% | 96.8% |
| 3672327 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.63 | 47.0 | 5.16e-01 | 96.8% | 96.7% |
| 3287252 | 2003.1.1.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Beta-ketacyl_N | 0.59 | 53.0 | 4.94e-01 | 97.9% | 91.9% |
| 3290362 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.59 | 48.0 | 4.76e-01 | 94.1% | 82.6% |
| 3179288 | 2007.2.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › FMN_red | 0.57 | 53.0 | 4.70e-01 | 100.0% | 71.3% |
| 3689925 | 2007.1.7.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH | 0.57 | 41.0 | 4.21e-01 | 88.2% | 75.6% |
| 3718155 | 2004.1.1.168 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SRPRB | 0.57 | 51.0 | 4.54e-01 | 95.2% | 86.1% |
| 3249053 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.56 | 51.0 | 4.89e-01 | 96.8% | 87.1% |
| 4382964 | 2004.1.1.422 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1, RsgA_GTPase | 0.55 | 48.0 | 4.87e-01 | 96.3% | 95.6% |
| 4417445 | 2004.1.1.571 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras, MMR_HSR1 | 0.55 | 48.0 | 4.86e-01 | 96.8% | 94.6% |
| None | — | 0.54 | 49.0 | 4.69e-01 | 98.4% | 93.5% | |
| 4547460 | 2003.1.1.61 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › KR | 0.54 | 49.0 | 4.20e-01 | 98.4% | 73.8% |
| 3945889 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 48.0 | 4.40e-01 | 96.8% | 94.7% |
| 3960988 | 2003.1.1.85 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › SpnB_Rossmann | 0.53 | 34.0 | 3.79e-01 | 98.9% | 82.1% |
| 3179904 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.53 | 47.0 | 4.10e-01 | 95.7% | 90.2% |
| 3944717 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 46.0 | 4.21e-01 | 95.2% | 93.6% |
| 3786558 | 2003.1.1.58 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_4 | 0.52 | 46.0 | 4.12e-01 | 95.7% | 94.7% |
| 1837559 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.52 | 43.0 | 3.75e-01 | 98.9% | 58.7% |
| 4959452 | 7579.1.1.27 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › AXE1 | 0.51 | 45.0 | 3.87e-01 | 95.2% | 68.4% |
| 3738220 | 2007.5.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL | 0.50 | 45.0 | 4.38e-01 | 97.3% | 90.7% |
| 5074999 | 2002.1.1.12 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 | 0.50 | 43.0 | 3.33e-01 | 93.0% | 83.0% |
| 2163931 | 2002.1.1.12 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 | 0.50 | 43.0 | 3.28e-01 | 94.1% | 85.4% |