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MK448465.1__QBX09795.1__JavanS388_0006__00020

Bact-Vir

MK448465.1__QBX09795.1__JavanS388_0006__00020

Identity

Accession:
MK448465 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

Taxonomy

TaxID: 2558672

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 140-184
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07553.17 best Lipoprotein_Ltp 81.0 7.30e-23 100.0% 93.8%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 58.0 5.47e-01 100.0% 66.7%
2dzlA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.77 53.0 4.72e-01 75.6% 50.0%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 56.0 4.96e-01 97.8% 55.6%
3tm8B00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.76 64.0 3.88e-01 100.0% 15.0%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 52.0 4.74e-01 95.6% 55.7%
1k6yA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.73 52.0 5.24e-01 97.8% 76.1%
3d7iB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.69 59.0 4.64e-01 100.0% 48.0%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 48.0 4.87e-01 100.0% 79.5%
3gbhB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.64 48.0 3.07e-01 82.2% 34.7%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.63 50.0 3.49e-01 100.0% 24.3%
2vk9A03 1.10.3730.30 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › 0.63 44.0 3.47e-01 75.6% 80.6%
4iejA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 49.0 4.32e-01 100.0% 57.3%
2blfB01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.61 49.0 4.54e-01 97.8% 87.3%
2iu1A00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 50.0 3.49e-01 100.0% 28.1%
1gjsA00 1.10.8.40 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain 0.61 42.0 3.77e-01 73.3% 58.5%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 43.0 3.77e-01 77.8% 84.5%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 53.0 3.25e-01 100.0% 64.8%
7mqzA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 47.0 3.08e-01 100.0% 19.9%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.57 47.0 4.14e-01 100.0% 78.7%
2raaA00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.56 43.0 3.08e-01 100.0% 31.5%
2n00A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.56 42.0 3.39e-01 86.7% 95.8%
1vbgA04 1.10.189.10 Mainly Alpha › Orthogonal Bundle › Pyruvate Phosphate di-kinase; domain 2 › Pyruvate Phosphate Dikinase, domain 2 0.55 46.0 4.24e-01 100.0% 90.5%
1kblA02 1.10.189.10 Mainly Alpha › Orthogonal Bundle › Pyruvate Phosphate di-kinase; domain 2 › Pyruvate Phosphate Dikinase, domain 2 0.55 45.0 4.14e-01 100.0% 90.5%
4dccA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 45.0 3.94e-01 100.0% 85.1%
1x57A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.53 38.0 3.22e-01 97.8% 41.8%
6hxpA01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.52 42.0 3.46e-01 100.0% 73.7%
2ewtA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 41.0 3.58e-01 88.9% 59.2%
2x0sA04 1.10.189.10 Mainly Alpha › Orthogonal Bundle › Pyruvate Phosphate di-kinase; domain 2 › Pyruvate Phosphate Dikinase, domain 2 0.52 42.0 3.86e-01 100.0% 90.8%
2vliB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 39.0 2.73e-01 91.1% 30.1%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 41.0 3.56e-01 95.6% 59.2%
2b0cA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.50 42.0 3.80e-01 100.0% 95.5%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4167193 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.91 74.0 7.43e-01 95.6% 88.9%
4384171 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.90 72.0 7.27e-01 95.6% 88.9%
5083774 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.84 68.0 6.90e-01 100.0% 93.3%
3261605 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.80 71.0 5.84e-01 100.0% 66.3%
3910504 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 61.0 5.95e-01 95.6% 76.0%
4978898 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 62.0 6.23e-01 93.3% 84.4%
3931083 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.79 64.0 6.22e-01 97.8% 80.0%
3663947 101.35.1.23 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.79 69.0 6.57e-01 100.0% 88.9%
4972252 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.79 66.0 4.71e-01 100.0% 31.4%
3929264 101.1.1.76 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.78 64.0 5.04e-01 100.0% 44.2%
4946654 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 66.0 5.94e-01 100.0% 70.0%
4945040 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 66.0 5.94e-01 100.0% 70.0%
3640877 101.1.2.627 alpha arrays › HTH › HTH › winged helix domain › Ovate 0.77 67.0 6.32e-01 100.0% 87.3%
3352416 639.1.1.2 alpha arrays › HHA-like › Hemolysin expression modulating protein HHA › Hemolysin expression modulating protein HHA › Ovate 0.77 66.0 6.27e-01 100.0% 87.3%
3692546 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.77 61.0 5.91e-01 97.8% 80.0%
3646179 4030.1.1.20 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › Ovate 0.76 66.0 6.22e-01 100.0% 87.3%
3730184 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.76 63.0 5.91e-01 100.0% 76.4%
5049604 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 62.0 5.86e-01 100.0% 74.5%
3506989 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 62.0 6.06e-01 100.0% 82.0%
3324409 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.75 60.0 5.69e-01 100.0% 76.4%
3456007 532.2.1.8 alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › Ovate 0.75 63.0 6.03e-01 100.0% 87.3%
3689691 101.1.10.61 alpha arrays › HTH › HTH › Cyclin-like › Clr5 0.74 60.0 4.89e-01 100.0% 48.2%
3303808 605.8.1.4 alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › Ovate 0.74 62.0 5.92e-01 100.0% 87.3%
3174238 101.1.1.247 alpha arrays › HTH › HTH › Three-helical HTH › zf-H2C2 0.74 57.0 5.08e-01 100.0% 58.6%
5053360 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 65.0 5.26e-01 100.0% 76.5%
4501343 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.73 62.0 5.85e-01 100.0% 80.0%
5028090 610.3.1.0 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain 0.73 62.0 4.38e-01 100.0% 31.7%
3946360 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 60.0 5.34e-01 100.0% 64.6%
4995716 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.73 63.0 5.80e-01 100.0% 81.7%
5049118 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 64.0 5.68e-01 100.0% 73.8%
3948842 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 59.0 5.63e-01 100.0% 78.2%
3834548 101.1.3.12 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › PF26138 0.71 51.0 4.59e-01 100.0% 53.8%
3636036 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 58.0 5.33e-01 100.0% 70.0%
4014101 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 57.0 4.75e-01 100.0% 50.6%
4975020 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.70 55.0 4.01e-01 100.0% 30.4%
3814136 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 59.0 5.60e-01 100.0% 85.5%
3512113 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.69 57.0 3.44e-01 97.8% 13.0%
4958195 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 55.0 5.21e-01 100.0% 76.4%
3334149 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 56.0 5.31e-01 100.0% 83.6%
4681426 314.1.1.9 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.67 57.0 3.36e-01 100.0% 14.1%
4661411 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 52.0 4.44e-01 91.1% 90.0%
3467989 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 55.0 5.14e-01 100.0% 76.7%
4237263 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.66 53.0 3.99e-01 100.0% 35.0%
3960420 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.65 57.0 4.13e-01 100.0% 86.4%
3422646 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 51.0 4.85e-01 100.0% 76.7%
3366917 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.64 51.0 4.96e-01 100.0% 83.6%
3269159 101.1.1.89 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding_7 0.64 51.0 4.95e-01 100.0% 83.6%
4108324 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.64 53.0 3.65e-01 100.0% 30.3%
3346039 101.35.1.23 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.63 50.0 4.91e-01 100.0% 96.2%
3401721 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 51.0 4.91e-01 100.0% 81.8%
4012219 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 53.0 3.67e-01 100.0% 28.5%
3839043 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.63 52.0 3.51e-01 100.0% 90.8%
4668514 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.63 51.0 3.66e-01 100.0% 37.3%
3618386 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 49.0 4.91e-01 100.0% 91.1%
3267034 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 49.0 4.77e-01 97.8% 84.0%
3417440 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.61 48.0 3.60e-01 100.0% 32.6%
3428283 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 49.0 4.63e-01 100.0% 75.0%
3783331 509.1.1.9 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 0.60 50.0 4.18e-01 97.8% 89.4%
3824846 604.17.1.0 alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.60 50.0 4.45e-01 100.0% 65.7%
3959437 592.2.1.15 alpha arrays › PWI domain-like › YugE-like › YugE-like › Transposase_mut 0.58 48.0 3.53e-01 97.8% 83.8%
3660838 3121.1.1.12 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › GIL1_IRKI_C 0.58 44.0 2.64e-01 86.7% 40.5%
3617137 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 48.0 4.59e-01 100.0% 80.0%
4664976 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.55 44.0 2.90e-01 100.0% 53.5%
3709633 509.1.1.9 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 0.54 44.0 3.58e-01 97.8% 68.0%
4977732 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.52 39.0 2.67e-01 97.8% 42.2%
D2 medium residues 39-135
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF07553.17 best Lipoprotein_Ltp 82.4 2.60e-23 49.5% 97.9%
PF07553.17 Lipoprotein_Ltp 83.7 1.00e-23 48.4% 95.8%