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MK448470.1__QBX09913.1__JavanS397_0015__00015

Bact-Vir

MK448470.1__QBX09913.1__JavanS397_0015__00015

Identity

Accession:
MK448470 ↗
Kingdom:
phage

Quality

89.2 mean pLDDT

Taxonomy

Streptococcus_satellite_phage_Javan397

TaxID: 2558677

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-112
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7qocA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.66 59.0 4.82e-01 100.0% 90.4%
7tj4A01 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 41.0 3.87e-01 99.0% 55.8%
2c41C01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.59 40.0 3.54e-01 70.7% 98.7%
7qihA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 37.0 3.77e-01 83.8% 63.4%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 51.0 4.84e-01 99.0% 82.9%
1b0bA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 47.0 4.27e-01 92.9% 91.5%
1ldjA04 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.56 49.0 4.70e-01 100.0% 81.7%
4yvoA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 41.0 3.93e-01 99.0% 65.5%
7e9uA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.55 47.0 3.13e-01 97.0% 24.6%
5an3A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 43.0 4.01e-01 98.0% 65.1%
4kvmA01 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 44.0 2.83e-01 87.9% 20.5%
2vxgA02 1.10.220.100 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1 0.55 41.0 4.43e-01 90.9% 95.3%
1vquA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.54 36.0 4.06e-01 100.0% 100.0%
4me2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 46.0 3.73e-01 99.0% 60.3%
3bjdA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.51 39.0 4.10e-01 81.8% 94.3%
2ggfA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 42.0 3.88e-01 94.9% 91.2%
1pduA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.51 45.0 3.47e-01 100.0% 50.9%
4i1eA03 1.25.10.30 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain 0.51 44.0 4.00e-01 100.0% 90.6%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3628123 109.40.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C 0.67 41.0 3.86e-01 100.0% 50.0%
3361838 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.66 43.0 3.67e-01 99.0% 40.6%
3163647 109.4.1.210 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.63 43.0 3.83e-01 100.0% 49.3%
3908431 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.60 38.0 3.52e-01 96.0% 49.6%
3680097 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.59 40.0 2.99e-01 98.0% 26.7%
3711094 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 49.0 3.47e-01 97.0% 39.7%
3431979 109.4.1.1273 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 0.56 45.0 3.50e-01 86.9% 55.9%
3451070 226.1.1.3 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ 0.55 46.0 4.15e-01 93.9% 65.7%
3738994 168.1.1.1 ↗ alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain › Sec7 0.55 45.0 3.66e-01 90.9% 56.9%
3318507 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.54 44.0 3.47e-01 93.9% 52.3%
3447684 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.53 39.0 3.60e-01 91.9% 57.8%
3431990 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.52 44.0 3.23e-01 91.9% 36.2%
3934293 109.40.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C 0.52 42.0 4.17e-01 100.0% 82.9%
3455807 226.1.1.3 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ 0.52 43.0 3.94e-01 92.9% 89.6%
3824151 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.52 43.0 3.31e-01 92.9% 50.4%
3273227 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.51 44.0 3.63e-01 94.9% 68.9%
3665948 109.4.1.1273 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 0.51 44.0 3.89e-01 96.0% 68.3%
3306698 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.50 39.0 3.39e-01 89.9% 52.5%