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MK448488.1__QBX10244.1__JavanS421_0009__00009
Bact-VirMK448488.1__QBX10244.1__JavanS421_0009__00009
Identity
- Accession:
- MK448488 ↗
- Kingdom:
- phage
Quality
82.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-50
Domain cluster:
rep: NC_070928.1__YP_010664929.1__PQB30_gp03__00003__D3-65
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4jiuA00 | 3.30.2010.10 | Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" | 0.78 | 69.0 | 5.39e-01 | 100.0% | 81.9% |
| 4jixB00 | 3.30.2010.10 | Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" | 0.76 | 65.0 | 5.08e-01 | 95.9% | 51.0% |
| 2yptA02 | 3.30.2010.10 | Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" | 0.75 | 62.0 | 5.25e-01 | 91.8% | 63.0% |
| 3dteA01 | 1.10.10.2910 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.73 | 60.0 | 4.64e-01 | 95.9% | 59.0% |
| 3lmcA00 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.70 | 59.0 | 4.02e-01 | 100.0% | 41.4% |
| 1eb6A00 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.70 | 59.0 | 4.07e-01 | 100.0% | 40.7% |
| 1j3bB01 | 3.40.449.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1 | 0.68 | 54.0 | 3.69e-01 | 91.8% | 28.6% |
| 1ylhA01 | 3.40.449.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1 | 0.67 | 53.0 | 3.56e-01 | 91.8% | 27.6% |
| 2epkX01 | 3.30.160.230 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › N-acetyl-beta-d-glucosaminidase | 0.66 | 56.0 | 4.87e-01 | 100.0% | 63.7% |
| 3k7lA01 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.66 | 54.0 | 3.71e-01 | 100.0% | 30.5% |
| 2ab0A00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.62 | 53.0 | 3.59e-01 | 100.0% | 46.7% |
| 3h1dA03 | 3.30.2410.10 | Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic fold › Hect, E3 ligase catalytic domain | 0.61 | 47.0 | 3.73e-01 | 89.8% | 39.3% |
| 3ug7C00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 45.0 | 2.85e-01 | 85.7% | 76.1% |
| 6k2cA02 | 3.30.2410.10 | Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic fold › Hect, E3 ligase catalytic domain | 0.60 | 49.0 | 3.86e-01 | 93.9% | 41.8% |
| 6jebA01 | 3.30.379.10 | Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like | 0.57 | 44.0 | 4.09e-01 | 100.0% | 82.7% |
| 1veeA00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.56 | 45.0 | 3.42e-01 | 93.9% | 70.9% |
| 6ks6Q02 | 3.30.260.10 | Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain | 0.56 | 45.0 | 3.54e-01 | 93.9% | 41.4% |
| 2qxyA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 40.0 | 3.09e-01 | 85.7% | 34.5% |
| 1yqtA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 43.0 | 2.80e-01 | 93.9% | 39.2% |
| 6ks6Z02 | 3.30.260.10 | Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain | 0.52 | 41.0 | 3.32e-01 | 93.9% | 43.0% |
| 1f6bB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 41.0 | 2.86e-01 | 91.8% | 56.1% |
| 3p9dD02 | 3.30.260.10 | Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain | 0.51 | 40.0 | 3.29e-01 | 93.9% | 43.8% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5055672 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.80 | 68.0 | 5.28e-01 | 95.9% | 55.2% |
| 5018719 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.79 | 67.0 | 4.51e-01 | 93.9% | 27.6% |
| 3953551 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.79 | 67.0 | 4.42e-01 | 95.9% | 29.0% |
| 4988454 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.78 | 67.0 | 5.28e-01 | 95.9% | 51.0% |
| None | — | 0.78 | 68.0 | 4.29e-01 | 95.9% | 30.4% | |
| 3962296 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.78 | 68.0 | 4.31e-01 | 95.9% | 30.9% |
| 3954373 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.78 | 68.0 | 4.13e-01 | 95.9% | 24.1% |
| 5061806 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.77 | 66.0 | 5.00e-01 | 95.9% | 54.8% |
| 5011816 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.76 | 67.0 | 4.93e-01 | 100.0% | 67.7% |
| 4537352 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.75 | 65.0 | 4.46e-01 | 95.9% | 42.5% |
| 4938622 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.74 | 61.0 | 4.07e-01 | 95.9% | 47.8% |
| 5027975 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.74 | 60.0 | 4.92e-01 | 93.9% | 63.2% |
| 3839854 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.74 | 63.0 | 4.21e-01 | 98.0% | 25.6% |
| 5060050 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.73 | 62.0 | 3.98e-01 | 95.9% | 51.3% |
| 4947544 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.73 | 62.0 | 4.47e-01 | 98.0% | 34.5% |
| 4960523 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.73 | 63.0 | 4.82e-01 | 100.0% | 67.0% |
| 3959582 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.72 | 60.0 | 4.62e-01 | 95.9% | 66.1% |
| 5061805 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.72 | 59.0 | 4.61e-01 | 93.9% | 45.5% |
| 4015287 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.72 | 60.0 | 3.79e-01 | 93.9% | 27.3% |
| 4935744 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.72 | 59.0 | 4.66e-01 | 93.9% | 55.2% |
| 3255793 | 105.1.1.0 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain | 0.71 | 57.0 | 4.08e-01 | 89.8% | 37.9% |
| 5080626 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.71 | 59.0 | 4.59e-01 | 98.0% | 53.9% |
| 4289183 | 7580.1.1.1 ↗ | a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 | 0.71 | 49.0 | 3.41e-01 | 73.5% | 63.9% |
| 4943357 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.69 | 58.0 | 3.82e-01 | 100.0% | 37.2% |
| 5047941 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.68 | 55.0 | 3.75e-01 | 95.9% | 42.5% |
| 5054592 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.67 | 57.0 | 4.52e-01 | 100.0% | 48.2% |
| 1837251 | 2498.2.1.5 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › GcnA_N | 0.66 | 56.0 | 4.83e-01 | 100.0% | 62.2% |
| 3457901 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.66 | 55.0 | 3.85e-01 | 93.9% | 45.9% |
| 4278662 | 2498.4.1.0 ↗ | mixed a+b and a/b › Zincin-like › HSP90 C-terminal domain (C-terminal part of Pfam 00183) › HSP90 C-terminal domain (C-terminal part of Pfam 00183) | 0.66 | 52.0 | 4.11e-01 | 93.9% | 56.1% |
| 3239938 | 207.1.1.79 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box | 0.63 | 47.0 | 2.89e-01 | 81.6% | 12.3% |
| 3880557 | 261.1.1.1 ↗ | a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT | 0.62 | 50.0 | 3.00e-01 | 95.9% | 12.2% |
| 5029892 | 306.4.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 | 0.61 | 49.0 | 4.21e-01 | 93.9% | 54.1% |
| 5027859 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.61 | 48.0 | 3.65e-01 | 95.9% | 58.0% |
| 3428602 | 4204.1.1.3 ↗ | alpha bundles › AF0941-like › AF0941-like › AF0941-like › DUF247 | 0.61 | 50.0 | 3.75e-01 | 93.9% | 97.7% |
| 5068595 | 306.4.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 | 0.61 | 50.0 | 4.00e-01 | 93.9% | 46.0% |
| 3918199 | 261.1.1.0 ↗ | a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain | 0.60 | 50.0 | 3.04e-01 | 93.9% | 14.8% |
| 3465180 | 2498.5.1.0 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like | 0.60 | 48.0 | 3.98e-01 | 93.9% | 49.5% |
| 4990417 | 306.4.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like | 0.59 | 47.0 | 3.80e-01 | 93.9% | 43.8% |
| 4931346 | 306.4.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 | 0.57 | 47.0 | 3.84e-01 | 93.9% | 49.5% |
| 3993461 | 261.1.1.1 ↗ | a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT | 0.57 | 48.0 | 2.89e-01 | 98.0% | 16.6% |
| None | — | 0.57 | 46.0 | 3.38e-01 | 93.9% | 64.0% | |
| 4099004 | 306.4.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 | 0.57 | 47.0 | 3.87e-01 | 100.0% | 85.0% |
| 4890675 | 306.4.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 | 0.56 | 46.0 | 4.21e-01 | 93.9% | 69.1% |
| 3615623 | 2004.11.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain | 0.56 | 44.0 | 3.04e-01 | 93.9% | 73.0% |
| 3807591 | 2007.2.5.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › PF30980 | 0.56 | 45.0 | 3.17e-01 | 93.9% | 54.3% |
| 3948292 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.55 | 42.0 | 2.32e-01 | 87.8% | 13.0% |
| 3258287 | 2498.5.1.0 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like | 0.55 | 44.0 | 3.58e-01 | 93.9% | 47.0% |
| 4977355 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.55 | 41.0 | 2.84e-01 | 85.7% | 51.6% |
| 3990632 | 2498.5.1.0 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like | 0.54 | 43.0 | 3.50e-01 | 93.9% | 44.8% |
| 4972759 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.54 | 43.0 | 2.97e-01 | 93.9% | 23.7% |
| 4951965 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.53 | 40.0 | 2.54e-01 | 91.8% | 13.6% |
| 3968808 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 46.0 | 3.44e-01 | 100.0% | 44.6% |
| 3218939 | 207.1.1.52 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 | 0.53 | 38.0 | 2.50e-01 | 85.7% | 38.6% |
| 5009871 | 2005.1.1.14 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct | 0.52 | 32.0 | 2.20e-01 | 79.6% | 13.7% |
| 5023501 | 2004.1.1.58 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase | 0.52 | 40.0 | 2.72e-01 | 100.0% | 45.8% |
| 4466198 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.50 | 35.0 | 2.28e-01 | 73.5% | 18.0% |
| 3610113 | 109.4.1.18 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA | 0.50 | 38.0 | 2.35e-01 | 87.8% | 47.1% |
| 4416753 | 2498.1.1.59 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_U49 | 0.50 | 37.0 | 2.41e-01 | 83.7% | 46.8% |
| 4944234 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.50 | 41.0 | 2.87e-01 | 93.9% | 41.1% |
| 5045375 | 2498.1.1.9 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 | 0.50 | 37.0 | 2.58e-01 | 95.9% | 44.7% |