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MK448489.1__QBX10263.1__JavanS428_0001__00022
Bact-VirMK448489.1__QBX10263.1__JavanS428_0001__00022
Identity
- Accession:
- MK448489 ↗
- Kingdom:
- phage
Quality
82.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-63
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ooqA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.72 | 53.0 | 3.40e-01 | 78.7% | 44.7% |
| 4qiwK00 | 3.90.940.10 | Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega | 0.63 | 44.0 | 4.58e-01 | 72.1% | 83.9% |
| 2yksA02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.63 | 51.0 | 4.19e-01 | 90.2% | 97.4% |
| 7zs9F01 | 3.90.940.10 | Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega | 0.62 | 47.0 | 3.94e-01 | 80.3% | 69.0% |
| 3iylB02 | 1.10.2050.10 | Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3 | 0.61 | 46.0 | 3.62e-01 | 86.9% | 38.1% |
| 1m6nA04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.59 | 50.0 | 3.99e-01 | 100.0% | 58.5% |
| 3dkaB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.58 | 46.0 | 3.64e-01 | 88.5% | 83.7% |
| 2erbA01 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.58 | 39.0 | 3.35e-01 | 72.1% | 70.1% |
| 3tejA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 40.0 | 2.59e-01 | 73.8% | 15.6% |
| 1zk8B02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 49.0 | 3.93e-01 | 100.0% | 82.6% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 44.0 | 3.70e-01 | 82.0% | 80.4% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.57 | 44.0 | 3.95e-01 | 83.6% | 61.2% |
| 2pz9A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 44.0 | 3.38e-01 | 96.7% | 63.7% |
| 1gcvB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 47.0 | 3.60e-01 | 96.7% | 76.5% |
| 1br2A02 | 1.10.10.820 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 35.0 | 3.69e-01 | 70.5% | 76.8% |
| 5mmjb02 | 1.10.287.610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.51 | 37.0 | 3.94e-01 | 77.0% | 92.3% |
| 8b6jF01 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.51 | 37.0 | 3.67e-01 | 91.8% | 70.1% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3989117 | 101.1.1.129 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 | 0.98 | 94.0 | 7.71e-01 | 100.0% | 61.0% |
| 3908686 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 67.0 | 5.60e-01 | 100.0% | 59.0% |
| 3389698 | 2484.1.1.120 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 | 0.75 | 63.0 | 3.94e-01 | 91.8% | 17.5% |
| 3404975 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.73 | 59.0 | 5.21e-01 | 90.2% | 60.0% |
| 4405015 | 152.1.2.0 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit | 0.67 | 56.0 | 5.67e-01 | 100.0% | 93.3% |
| 4625344 | 152.1.2.0 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit | 0.67 | 57.0 | 5.52e-01 | 98.4% | 84.3% |
| 3575378 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 47.0 | 4.08e-01 | 73.8% | 49.5% |
| 3690556 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.64 | 48.0 | 4.89e-01 | 86.9% | 81.7% |
| 3349933 | 109.4.1.1172 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VTT_dom | 0.62 | 44.0 | 3.42e-01 | 75.4% | 78.6% |
| 3388298 | 2003.1.5.62 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I | 0.62 | 49.0 | 3.01e-01 | 85.2% | 22.1% |
| 4422279 | 6130.1.1.1 ↗ | alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N | 0.61 | 51.0 | 4.83e-01 | 100.0% | 77.3% |
| 3598977 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.60 | 45.0 | 4.07e-01 | 85.2% | 58.8% |
| 4944233 | 3718.1.1.0 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT | 0.57 | 46.0 | 4.41e-01 | 88.5% | 87.1% |
| 2756561 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.57 | 49.0 | 3.96e-01 | 98.4% | 85.2% |
| 4300671 | 148.1.3.209 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › GrpE | 0.56 | 40.0 | 3.29e-01 | 77.0% | 50.4% |
| 5026959 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.52 | 45.0 | 4.32e-01 | 100.0% | 85.7% |