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MK448499.1__QBX10470.1__JavanS441_0010__00010

Bact-Vir

MK448499.1__QBX10470.1__JavanS441_0010__00010

Identity

Accession:
MK448499 ↗
Kingdom:
phage

Quality

73.6 mean pLDDT

Taxonomy

Streptococcus_satellite_phage_Javan441

TaxID: 2558706

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-52
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5l3wA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.90 67.0 5.34e-01 80.4% 42.9%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.86 75.0 5.27e-01 95.7% 33.3%
1w98B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.86 69.0 5.06e-01 87.0% 35.1%
2g7zA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.84 61.0 4.14e-01 80.4% 23.2%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.83 67.0 5.60e-01 89.1% 52.6%
4p5aC00 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.82 65.0 4.13e-01 93.5% 17.9%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.81 60.0 4.61e-01 80.4% 35.9%
2aplA01 1.10.8.330 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like 0.80 65.0 5.69e-01 93.5% 60.3%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 62.0 5.36e-01 87.0% 56.5%
1kq4A00 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.78 66.0 4.22e-01 93.5% 24.1%
5fmnA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.77 61.0 4.94e-01 87.0% 47.7%
7d1tA01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.77 59.0 4.01e-01 100.0% 22.5%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.76 67.0 3.88e-01 100.0% 36.8%
2q0yA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.75 55.0 3.96e-01 82.6% 26.8%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.75 54.0 5.37e-01 93.5% 74.5%
2x3mA00 1.25.40.670 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.75 59.0 3.97e-01 87.0% 33.1%
3bm1A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.74 55.0 3.65e-01 82.6% 20.3%
2pmyA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.73 51.0 4.38e-01 73.9% 57.5%
2l35A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.72 59.0 5.33e-01 100.0% 66.7%
3lupA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.72 66.0 4.44e-01 100.0% 68.4%
1vhxB00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.71 62.0 4.27e-01 93.5% 45.7%
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.71 55.0 5.54e-01 87.0% 88.9%
2c5qA00 3.50.30.40 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like 0.69 59.0 3.77e-01 97.8% 99.1%
1nh2B00 1.10.287.100 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 55.0 5.56e-01 95.7% 93.5%
1rr7A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 49.0 4.91e-01 80.4% 84.8%
1ufvA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.67 56.0 4.48e-01 100.0% 45.5%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.67 59.0 4.31e-01 97.8% 49.2%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.66 51.0 4.01e-01 97.8% 38.2%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 53.0 4.51e-01 93.5% 55.4%
1nvpB00 1.10.287.100 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 50.0 5.08e-01 95.7% 97.7%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.65 52.0 4.16e-01 100.0% 41.3%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 3.86e-01 82.6% 43.7%
1pixA03 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.61 52.0 3.20e-01 100.0% 59.9%
3kd3A02 1.10.150.210 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 0.60 44.0 4.07e-01 82.6% 61.7%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3565003 165.1.1.3 ↗ alpha duplicates or obligate multimers › Dimerisation interlock › SinR repressor dimerisation domain-like › SinR repressor dimerisation domain-like › PF28222 0.98 71.0 8.14e-01 76.1% 100.0%
3385053 5076.2.1.10 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › PF29520 0.93 83.0 4.98e-01 100.0% 16.7%
4020233 101.42.1.0 ↗ alpha arrays › HTH › CC2 domain in SUN proteins › CC2 domain in SUN proteins 0.89 76.0 7.11e-01 95.7% 76.4%
4016157 6026.1.1.1 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 0.87 78.0 5.48e-01 100.0% 34.8%
3483031 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.87 72.0 6.56e-01 95.7% 70.0%
4318142 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.84 70.0 4.80e-01 89.1% 30.7%
3966348 5058.1.1.16 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.84 73.0 5.97e-01 100.0% 52.9%
3252433 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.83 64.0 3.81e-01 89.1% 12.7%
3685821 129.1.1.15 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer 0.82 70.0 5.30e-01 100.0% 40.0%
4994472 5060.1.1.0 ↗ alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C 0.81 66.0 4.18e-01 93.5% 18.6%
5047182 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.81 69.0 6.23e-01 100.0% 69.2%
4518916 4144.1.1.8 ↗ alpha duplicates or obligate multimers › YejL-like › YejL-like › YejL-like › GlutR_dimer 0.80 68.0 5.91e-01 100.0% 61.3%
4564711 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.80 68.0 5.89e-01 100.0% 61.3%
4267174 614.1.1.24 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › GlutR_dimer 0.79 68.0 5.86e-01 100.0% 61.3%
4337032 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.79 61.0 4.29e-01 82.6% 28.6%
3741234 605.2.1.3 ↗ alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.78 60.0 4.42e-01 93.5% 33.0%
3607406 6026.1.1.0 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.78 69.0 5.73e-01 100.0% 93.8%
4630575 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.78 60.0 4.32e-01 82.6% 30.4%
3630623 708.1.2.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › TCTP 0.78 61.0 4.12e-01 89.1% 23.0%
5032477 129.1.1.15 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer 0.76 64.0 4.97e-01 100.0% 42.7%
4470267 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.76 61.0 4.60e-01 87.0% 47.3%
5082622 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.75 65.0 5.37e-01 100.0% 56.5%
1383934 104.1.1.2 ↗ alpha duplicates or obligate multimers › TFIIA, alpha-helical domain › TFIIA, alpha-helical domain › TFIIA, alpha-helical domain › TFIIA 0.74 58.0 5.33e-01 95.7% 66.7%
3247190 397.7.1.4 ↗ few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › C_tripleX 0.74 51.0 5.57e-01 76.1% 97.1%
5059135 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.71 63.0 5.43e-01 97.8% 94.3%
3936611 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.69 56.0 4.70e-01 93.5% 51.2%