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MK448505.1__QBX10592.1__JavanS461_0010__00010

Bact-Vir

MK448505.1__QBX10592.1__JavanS461_0010__00010

Identity

Accession:
MK448505 ↗
Kingdom:
phage

Quality

90.4 mean pLDDT

Taxonomy

Streptococcus_satellite_phage_Javan461

TaxID: 2558712

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-61
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ja3A02 1.10.286.90 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › MFS transporter, transmembrane helix TM10b 0.91 68.0 6.95e-01 84.1% 81.4%
3q1xA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.90 79.0 5.36e-01 100.0% 30.2%
3fnnA03 6.10.140.440 Special › Helix non-globular › Helix Hairpins › 0.83 62.0 6.30e-01 86.4% 81.4%
1cp9A02 1.10.287.150 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.82 54.0 5.89e-01 75.0% 100.0%
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.75 65.0 5.08e-01 100.0% 48.5%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.74 58.0 4.79e-01 84.1% 51.4%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.73 53.0 4.56e-01 77.3% 57.4%
1pnkA02 1.10.287.150 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 55.0 5.48e-01 86.4% 80.4%
6ks6B02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.69 57.0 4.19e-01 95.5% 69.7%
4ar9A02 1.10.390.20 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › 0.63 48.0 3.34e-01 81.8% 59.9%
4o1gA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 51.0 3.11e-01 97.7% 37.5%
5lb3B02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 54.0 3.41e-01 100.0% 78.1%
1kfdA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.60 50.0 4.27e-01 93.2% 57.7%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3724001 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.84 61.0 4.27e-01 79.5% 26.2%
4983650 5065.1.1.3 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.84 74.0 4.59e-01 100.0% 18.3%
4285086 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.81 67.0 4.08e-01 90.9% 15.7%
3864752 376.1.1.113 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Pex2_Pex12 0.79 69.0 5.24e-01 100.0% 53.3%
3749766 7023.1.1.2 ↗ alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › Pex2_Pex12 0.78 67.0 5.04e-01 100.0% 50.9%
4872552 531.3.1.1 ↗ alpha arrays › Domains of FliG › N-terminal domain of FliG › N-terminal domain of FliG › FliG_N 0.75 66.0 5.01e-01 100.0% 87.6%
4535655 140.1.1.4 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e,DALR_2 0.69 56.0 3.75e-01 90.9% 24.4%