←Back to structures
MK448526.1__QBX11067.1__JavanS54_0010__00020
Bact-VirMK448526.1__QBX11067.1__JavanS54_0010__00020
Identity
- Accession:
- MK448526 ↗
- Kingdom:
- phage
Quality
92.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-69
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c2gA02 | 1.10.10.1630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sys-1 C-terminal domain-like | 0.77 | 40.0 | 3.86e-01 | 79.0% | 45.6% |
| 3tbiB02 | 6.10.140.1670 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 60.0 | 5.14e-01 | 100.0% | 57.0% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 47.0 | 4.69e-01 | 96.8% | 66.7% |
| 2gf4A00 | 1.20.1270.110 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 | 0.71 | 49.0 | 4.35e-01 | 100.0% | 51.1% |
| 5iduC03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.70 | 50.0 | 3.73e-01 | 100.0% | 30.2% |
| 4i1eA03 | 1.25.10.30 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain | 0.66 | 48.0 | 3.72e-01 | 100.0% | 34.5% |
| 2rghA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.66 | 43.0 | 2.86e-01 | 74.2% | 16.5% |
| 4xr7E01 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.66 | 47.0 | 3.00e-01 | 75.8% | 44.5% |
| 1yrtA03 | 1.10.150.920 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.63 | 41.0 | 4.62e-01 | 100.0% | 87.5% |
| 3rkgA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.62 | 53.0 | 3.90e-01 | 100.0% | 36.6% |
| 3hlzA02 | 1.20.120.1090 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.61 | 48.0 | 3.85e-01 | 87.1% | 48.1% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 53.0 | 5.16e-01 | 93.5% | 89.6% |
| 1bvp103 | 1.10.170.10 | Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 3 › Bluetongue Virus 10, subunit 1, domain 3 | 0.60 | 44.0 | 3.87e-01 | 98.4% | 52.1% |
| 1ctfA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.59 | 44.0 | 4.38e-01 | 83.9% | 79.4% |
| 3b1fA02 | 1.10.3660.10 | Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain | 0.59 | 46.0 | 3.77e-01 | 83.9% | 71.2% |
| 3terA00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 48.0 | 3.99e-01 | 100.0% | 49.6% |
| 5nl6B01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 51.0 | 4.10e-01 | 100.0% | 50.4% |
| 3ktdD02 | 1.10.3660.10 | Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain | 0.58 | 45.0 | 3.74e-01 | 83.9% | 69.7% |
| 4n21E00 | 1.10.287.210 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 51.0 | 4.07e-01 | 100.0% | 64.5% |
| 1ghhA00 | 3.30.910.10 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › DinI-like | 0.56 | 49.0 | 4.47e-01 | 96.8% | 76.5% |
| 4neoA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.55 | 46.0 | 4.22e-01 | 96.8% | 88.0% |
| 1xszA02 | 1.10.1000.11 | Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2 | 0.55 | 38.0 | 3.18e-01 | 72.6% | 61.7% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.55 | 44.0 | 3.93e-01 | 85.5% | 85.9% |
| 3gs3A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.54 | 48.0 | 3.22e-01 | 100.0% | 28.1% |
| 3vx4A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 40.0 | 2.83e-01 | 85.5% | 33.1% |
| 1irxA04 | 1.10.10.770 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 45.0 | 3.86e-01 | 98.4% | 98.1% |
| 4pl0A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 41.0 | 2.80e-01 | 85.5% | 32.8% |
| 3uwcA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 40.0 | 3.35e-01 | 90.3% | 80.5% |
| 3pvlA03 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.52 | 45.0 | 3.64e-01 | 95.2% | 51.7% |
| 6nplA01 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.51 | 44.0 | 2.67e-01 | 100.0% | 83.7% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4259729 | 3755.3.1.295 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WWC1 | 0.84 | 56.0 | 4.26e-01 | 100.0% | 31.9% |
| 2813309 | 3339.1.1.1 ↗ | alpha bundles › Helical domain in glucansucrase GTF180 › Helical domain in glucansucrase GTF180 › Helical domain in glucansucrase GTF180 › Glyco_hydro_70 | 0.69 | 48.0 | 3.58e-01 | 93.5% | 31.5% |
| 2417975 | 3339.1.1.0 ↗ | alpha bundles › Helical domain in glucansucrase GTF180 › Helical domain in glucansucrase GTF180 › Helical domain in glucansucrase GTF180 | 0.68 | 47.0 | 3.56e-01 | 95.2% | 31.0% |
| 4458167 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.68 | 46.0 | 3.35e-01 | 71.0% | 55.2% |
| 3392253 | 103.1.1.1 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA | 0.67 | 50.0 | 3.99e-01 | 79.0% | 80.8% |
| 3172687 | 4033.1.1.5 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_ox_N | 0.67 | 43.0 | 3.27e-01 | 93.5% | 27.3% |
| 4322551 | 604.23.1.0 ↗ | alpha bundles › Spectrin repeat-like › Sbi complement-binding domain › Sbi complement-binding domain | 0.64 | 47.0 | 4.93e-01 | 77.4% | 92.7% |
| 4167208 | 604.15.1.0 ↗ | alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like | 0.63 | 46.0 | 4.74e-01 | 77.4% | 85.0% |
| 3259751 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.63 | 59.0 | 5.33e-01 | 100.0% | 81.2% |
| 3797019 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.63 | 56.0 | 3.56e-01 | 98.4% | 38.3% |
| 4983729 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.63 | 45.0 | 3.78e-01 | 98.4% | 44.8% |
| 3687320 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.62 | 56.0 | 4.52e-01 | 100.0% | 57.4% |
| 3938136 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.61 | 48.0 | 4.16e-01 | 96.8% | 55.8% |
| 4028746 | 10.28.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 | 0.60 | 46.0 | 3.40e-01 | 100.0% | 31.9% |
| 3268181 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.60 | 45.0 | 2.86e-01 | 90.3% | 15.5% |
| 3216082 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.60 | 45.0 | 3.59e-01 | 79.0% | 72.2% |
| 4789520 | 3719.1.1.0 ↗ | alpha bundles › Imelysin peptidase-like › Imelysin peptidase-like › Imelysin peptidase-like | 0.59 | 51.0 | 5.13e-01 | 96.8% | 93.7% |
| 5044957 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.57 | 40.0 | 3.94e-01 | 93.5% | 67.1% |
| 3597083 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.57 | 48.0 | 4.08e-01 | 100.0% | 56.2% |
| 3294780 | 3755.3.1.375 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF4079 | 0.57 | 51.0 | 3.83e-01 | 100.0% | 58.0% |
| 3271096 | 168.1.1.1 ↗ | alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain › Sec7 | 0.54 | 42.0 | 3.01e-01 | 90.3% | 28.1% |
| 3191621 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 43.0 | 4.58e-01 | 88.7% | 100.0% |
| 4337254 | 3755.4.1.79 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › eIF3h_C | 0.53 | 49.0 | 3.87e-01 | 98.4% | 100.0% |
| 4787850 | 3525.1.1.1 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET | 0.51 | 38.0 | 3.85e-01 | 85.5% | 81.0% |