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MK448546.1__QBX11410.1__JavanS571_0002__00016
Bact-VirMK448546.1__QBX11410.1__JavanS571_0002__00016
Identity
- Accession:
- MK448546 ↗
- Kingdom:
- phage
Quality
96.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-55
Domain cluster:
rep: MK448972.1__QBX30023.1__Javan520_0035__00023__D70-117
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2esnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 39.0 | 3.33e-01 | 74.5% | 34.8% |
| 7dklA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 48.0 | 3.77e-01 | 76.4% | 89.5% |
| 2ymmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.66 | 45.0 | 4.07e-01 | 70.9% | 82.2% |
| 1e7lA02 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.59 | 46.0 | 4.63e-01 | 89.1% | 98.2% |
| 1f35A00 | 2.60.120.390 | Mainly Beta › Sandwich › Jelly Rolls › Olfactory marker | 0.57 | 44.0 | 3.23e-01 | 85.5% | 76.5% |
| 1mw5A01 | 1.20.272.30 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.57 | 46.0 | 3.43e-01 | 90.9% | 90.3% |
| 3natA01 | 3.40.50.11250 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 | 0.50 | 41.0 | 3.17e-01 | 100.0% | 87.1% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3973740 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.70 | 41.0 | 3.31e-01 | 74.5% | 32.0% |
| 3226089 | 3998.1.1.1 ↗ | alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 | 0.68 | 48.0 | 4.31e-01 | 87.3% | 54.7% |
| 4034096 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 41.0 | 3.58e-01 | 78.2% | 41.2% |
| 3387117 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.65 | 40.0 | 3.50e-01 | 74.5% | 42.5% |
| 3284225 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.64 | 40.0 | 3.54e-01 | 74.5% | 43.8% |
| 3253824 | 3998.1.1.1 ↗ | alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 | 0.63 | 46.0 | 4.23e-01 | 87.3% | 60.0% |
| 3678611 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.62 | 48.0 | 4.26e-01 | 83.6% | 66.3% |
| 3167342 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.62 | 50.0 | 3.11e-01 | 92.7% | 21.3% |
| 2979157 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.61 | 50.0 | 3.83e-01 | 89.1% | 71.3% |
| 3686623 | 601.1.1.90 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF3433 | 0.59 | 46.0 | 3.23e-01 | 92.7% | 33.2% |
| 4028147 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.51 | 39.0 | 3.76e-01 | 94.5% | 98.6% |