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MK448580.1__QBX11938.1__JavanS62_0018__00003
Bact-VirMK448580.1__QBX11938.1__JavanS62_0018__00003
Identity
- Accession:
- MK448580 ↗
- Kingdom:
- phage
Quality
88.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-41
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mzbA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.91 | 70.0 | 5.27e-01 | 83.8% | 37.8% |
| 2o35A00 | 1.10.3340.10 | Mainly Alpha › Orthogonal Bundle › SMc04008-like fold › SMc04008-like | 0.88 | 74.0 | 5.73e-01 | 94.6% | 54.4% |
| 3bosA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.85 | 65.0 | 5.36e-01 | 89.2% | 47.8% |
| 1w8iA00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.84 | 70.0 | 4.57e-01 | 97.3% | 22.7% |
| 2ymmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.84 | 71.0 | 5.76e-01 | 100.0% | 60.3% |
| 1knzA01 | 6.10.280.20 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain | 0.84 | 72.0 | 5.27e-01 | 100.0% | 37.3% |
| 2h92A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.83 | 68.0 | 4.21e-01 | 94.6% | 16.2% |
| 3p5jB02 | 1.10.20.120 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.81 | 69.0 | 5.13e-01 | 100.0% | 39.6% |
| 2w43A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.77 | 63.0 | 5.65e-01 | 100.0% | 75.4% |
| 4mspB02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.77 | 63.0 | 5.08e-01 | 94.6% | 46.7% |
| 3ww3A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.76 | 65.0 | 3.97e-01 | 100.0% | 95.4% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.76 | 60.0 | 5.01e-01 | 100.0% | 61.3% |
| 16vpA00 | 1.10.1290.10 | Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) | 0.75 | 62.0 | 3.68e-01 | 100.0% | 12.5% |
| 4ofzA01 | 1.20.58.1800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 54.0 | 3.83e-01 | 78.4% | 26.5% |
| 3crvA02 | 1.10.275.30 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › | 0.75 | 56.0 | 3.97e-01 | 89.2% | 27.8% |
| 3d0wA00 | 1.10.760.20 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Protein of unknown function DUF3243 | 0.75 | 59.0 | 4.74e-01 | 100.0% | 57.0% |
| 1is8A01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.73 | 58.0 | 5.21e-01 | 100.0% | 71.7% |
| 3zfvA02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.72 | 61.0 | 4.02e-01 | 97.3% | 23.1% |
| 2yikA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.71 | 56.0 | 3.13e-01 | 89.2% | 7.3% |
| 1n5uA01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.71 | 58.0 | 4.36e-01 | 100.0% | 39.8% |
| 3ccgA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.70 | 59.0 | 3.79e-01 | 100.0% | 37.6% |
| 6p10B02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.70 | 52.0 | 4.07e-01 | 86.5% | 35.2% |
| 4b3hA03 | 1.10.1040.50 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › | 0.70 | 59.0 | 3.69e-01 | 100.0% | 81.6% |
| 1fmjA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 54.0 | 3.19e-01 | 94.6% | 10.2% |
| 3b0bB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.68 | 52.0 | 4.15e-01 | 100.0% | 39.2% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 48.0 | 4.00e-01 | 78.4% | 50.0% |
| 2g5gX02 | 1.10.8.760 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Haem-binding uptake, Tiki superfamily, ChaN, domain 2 | 0.65 | 50.0 | 4.57e-01 | 97.3% | 72.9% |
| 4i5jA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.64 | 50.0 | 3.44e-01 | 97.3% | 38.9% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.62 | 48.0 | 4.07e-01 | 89.2% | 94.0% |
| 4muoA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.61 | 41.0 | 3.28e-01 | 70.3% | 36.1% |
| 6qelA01 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.61 | 51.0 | 3.43e-01 | 97.3% | 27.8% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 53.0 | 4.48e-01 | 100.0% | 61.3% |
| 4i8oA03 | 1.10.8.1130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain | 0.55 | 39.0 | 3.57e-01 | 97.3% | 59.7% |
| 1xatA00 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.53 | 43.0 | 2.70e-01 | 91.9% | 17.8% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4350523 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.92 | 81.0 | 5.85e-01 | 100.0% | 37.0% |
| 4992019 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.89 | 78.0 | 5.13e-01 | 100.0% | 46.2% |
| 5044210 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.88 | 73.0 | 5.94e-01 | 94.6% | 50.0% |
| 3504540 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.88 | 65.0 | 5.70e-01 | 81.1% | 54.5% |
| 3699805 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.88 | 71.0 | 5.76e-01 | 97.3% | 48.6% |
| 4034107 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.87 | 76.0 | 5.14e-01 | 100.0% | 28.5% |
| 5024512 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.87 | 64.0 | 5.83e-01 | 81.1% | 60.0% |
| 4119938 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.86 | 73.0 | 4.25e-01 | 100.0% | 11.8% |
| 4560977 | 5046.1.1.1 ↗ | extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b › ATP-synt_B | 0.85 | 74.0 | 4.80e-01 | 100.0% | 23.1% |
| 4024734 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.84 | 71.0 | 4.63e-01 | 100.0% | 23.0% |
| 3809576 | 103.4.1.5 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 | 0.84 | 73.0 | 6.07e-01 | 100.0% | 64.6% |
| 4644218 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.84 | 71.0 | 5.51e-01 | 100.0% | 43.5% |
| 2776079 | 3787.1.1.0 ↗ | alpha bundles › HAD superfamily helical bundle insertion domain | 0.84 | 72.0 | 6.33e-01 | 100.0% | 77.2% |
| 7720 | 4060.1.1.1 ↗ | a+b duplicates or obligate multimers › NSP3 homodimer › NSP3 homodimer › NSP3 homodimer › Rota_NSP3 | 0.84 | 72.0 | 4.75e-01 | 100.0% | 24.7% |
| 3444901 | 4954.1.1.0 ↗ | a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit | 0.84 | 72.0 | 4.63e-01 | 100.0% | 21.1% |
| 4236554 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.83 | 63.0 | 5.39e-01 | 83.8% | 51.7% |
| 4145524 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.82 | 61.0 | 5.14e-01 | 83.8% | 47.7% |
| 4974262 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.81 | 64.0 | 5.51e-01 | 89.2% | 55.0% |
| 4163949 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.81 | 66.0 | 5.20e-01 | 94.6% | 95.0% |
| 3363158 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.81 | 70.0 | 5.21e-01 | 97.3% | 42.2% |
| 3831795 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.81 | 67.0 | 4.21e-01 | 100.0% | 18.5% |
| 3333015 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.80 | 69.0 | 5.17e-01 | 97.3% | 42.2% |
| 4445757 | 108.1.1.28 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 | 0.80 | 67.0 | 5.34e-01 | 94.6% | 48.0% |
| 3590551 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.80 | 59.0 | 5.46e-01 | 83.8% | 62.0% |
| 4008378 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.79 | 59.0 | 5.27e-01 | 83.8% | 56.4% |
| 3911815 | 108.1.1.97 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 | 0.79 | 66.0 | 5.29e-01 | 94.6% | 48.0% |
| 5055205 | 4954.1.1.1 ↗ | a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 | 0.79 | 68.0 | 4.74e-01 | 100.0% | 30.1% |
| 3979378 | 5051.1.1.12 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Trp_Tyr_perm | 0.79 | 67.0 | 3.78e-01 | 100.0% | 9.5% |
| 3703407 | 4954.1.1.1 ↗ | a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 | 0.79 | 68.0 | 4.43e-01 | 100.0% | 23.1% |
| 4269306 | 101.1.1.287 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF28388 | 0.79 | 64.0 | 5.77e-01 | 89.2% | 66.0% |
| 3324564 | 108.1.1.51 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › NADPH_Ox | 0.78 | 67.0 | 4.28e-01 | 100.0% | 20.6% |
| 3738100 | 3722.1.1.0 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain | 0.78 | 63.0 | 3.70e-01 | 100.0% | 11.2% |
| 3643664 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.77 | 66.0 | 5.29e-01 | 100.0% | 49.3% |
| 4928364 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.77 | 61.0 | 4.23e-01 | 100.0% | 26.1% |
| 4982784 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.77 | 58.0 | 5.14e-01 | 89.2% | 55.0% |
| 4353063 | 621.1.1.3 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB | 0.76 | 64.0 | 4.26e-01 | 100.0% | 23.7% |
| 5066354 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.76 | 59.0 | 5.34e-01 | 97.3% | 61.8% |
| 3643488 | 192.15.1.11 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › CemA | 0.76 | 61.0 | 5.08e-01 | 100.0% | 50.7% |
| 4038157 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.75 | 63.0 | 5.77e-01 | 97.3% | 72.0% |
| 3209229 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.75 | 63.0 | 3.82e-01 | 100.0% | 14.7% |
| None | — | 0.74 | 61.0 | 3.84e-01 | 97.3% | 18.0% | |
| 4956405 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.74 | 59.0 | 3.41e-01 | 100.0% | 9.6% |
| 4948317 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.74 | 64.0 | 5.84e-01 | 100.0% | 76.0% |
| 3829960 | 5.1.4.508 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30952 | 0.73 | 59.0 | 3.23e-01 | 89.2% | 5.9% |
| 3590266 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.72 | 55.0 | 4.10e-01 | 97.3% | 31.3% |
| 2858351 | 1128.1.1.2 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 | 0.70 | 53.0 | 3.99e-01 | 100.0% | 31.0% |
| 3185674 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.69 | 58.0 | 3.40e-01 | 100.0% | 32.3% |
| 3817687 | 108.1.1.4 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.69 | 53.0 | 4.72e-01 | 81.1% | 58.2% |
| 3264584 | 5010.1.1.0 ↗ | extended segments › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV | 0.68 | 56.0 | 5.06e-01 | 100.0% | 68.0% |
| 3987150 | 101.1.1.382 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DDE_Tnp_IS66 | 0.66 | 53.0 | 4.86e-01 | 91.9% | 70.0% |
| 3988910 | 101.1.1.382 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DDE_Tnp_IS66 | 0.65 | 51.0 | 4.80e-01 | 89.2% | 86.7% |
| 3447846 | 5010.1.1.6 ↗ | extended segments › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › SPC12 | 0.60 | 44.0 | 4.35e-01 | 100.0% | 81.2% |