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MK448584.1__QBX11994.1__JavanS624_0002__00002
Bact-VirMK448584.1__QBX11994.1__JavanS624_0002__00002
Identity
- Accession:
- MK448584 ↗
- Kingdom:
- phage
Quality
76.6
mean pLDDT
Cluster
View cluster (43 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-68
Domain cluster:
rep: MK448522.1__QBX10995.1__JavanS519_0024__00002__D4-68
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12844.14 best | HTH_19 | 33.8 | 3.50e-08 | 100.0% | 89.1% |
| PF13443.13 | HTH_26 | 26.0 | 1.20e-05 | 100.0% | 87.3% |
| PF01381.29 | HTH_3 | 48.4 | 1.10e-12 | 96.5% | 100.0% |
| PF13560.13 | HTH_31 | 31.2 | 3.00e-07 | 94.8% | 82.8% |
D2
medium
residues 84-150
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6jrpA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.66 | 36.0 | 3.83e-01 | 95.5% | 59.0% |
| 3fm9A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 41.0 | 3.97e-01 | 83.6% | 66.7% |
| 4ceiA05 | 1.10.486.10 | Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 | 0.52 | 37.0 | 2.90e-01 | 77.6% | 37.7% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4025157 | 3810.1.1.0 ↗ | alpha duplicates or obligate multimers › Uncharacterized protein YP_510488.1 › Uncharacterized protein YP_510488.1 › Uncharacterized protein YP_510488.1 | 0.69 | 53.0 | 4.95e-01 | 83.6% | 76.5% |
| 3673267 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.62 | 42.0 | 4.18e-01 | 70.1% | 80.0% |
| 3685058 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.60 | 46.0 | 4.37e-01 | 83.6% | 73.8% |
| 5026259 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.57 | 39.0 | 2.80e-01 | 71.6% | 42.0% |
| 3958795 | 5051.1.1.0 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like | 0.53 | 39.0 | 2.48e-01 | 76.1% | 75.6% |
| 4492735 | 4982.1.1.1 ↗ | alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › KaiA | 0.52 | 37.0 | 2.99e-01 | 74.6% | 66.2% |