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MK448629.1__QBX12893.1__JavanS742_0018__00018

Bact-Vir

MK448629.1__QBX12893.1__JavanS742_0018__00018

Identity

Accession:
MK448629 ↗
Kingdom:
phage

Quality

70.2 mean pLDDT

Taxonomy

Streptococcus_satellite_phage_Javan742

TaxID: 2558836

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-85
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wxcB01 3.30.1880.10 Alpha Beta › 2-Layer Sandwich › protein ne1242 fold › protein ne1242 domain like 0.72 42.0 4.79e-01 74.1% 79.0%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.69 42.0 4.33e-01 92.9% 63.9%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.67 44.0 4.24e-01 92.9% 59.6%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.62 38.0 4.00e-01 95.3% 67.1%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.61 40.0 3.91e-01 96.5% 60.9%
1r8nA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 47.0 3.74e-01 85.9% 81.6%
1yqeA01 3.40.630.50 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › AF0625-like 0.59 35.0 2.72e-01 95.3% 25.8%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.59 42.0 4.21e-01 84.7% 71.9%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 40.0 3.87e-01 78.8% 79.2%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.54 47.0 3.97e-01 98.8% 76.0%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.53 44.0 3.81e-01 94.1% 82.0%
6guuA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 27.0 3.20e-01 96.5% 74.1%
2hcuA00 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.52 42.0 3.24e-01 84.7% 96.6%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.51 42.0 4.02e-01 94.1% 92.2%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.51 36.0 3.67e-01 89.4% 79.7%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 34.0 2.88e-01 70.6% 40.5%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 29.0 3.23e-01 95.3% 74.2%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3914736 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.72 43.0 4.84e-01 92.9% 78.5%
3996720 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.70 42.0 4.61e-01 91.8% 72.9%
3911194 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.68 42.0 4.40e-01 94.1% 66.3%
907 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.68 43.0 3.91e-01 92.9% 49.1%
3469277 4357.1.1.6 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 0.68 46.0 4.68e-01 70.6% 71.8%
3921414 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.68 42.0 4.36e-01 92.9% 67.1%
3337215 4357.1.1.6 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 0.67 46.0 4.64e-01 70.6% 70.6%
3907821 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.67 44.0 4.32e-01 96.5% 62.2%
3617714 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.67 42.0 4.41e-01 94.1% 70.7%
3846535 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.67 41.0 4.11e-01 94.1% 58.9%
3453009 4357.1.1.6 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 0.66 45.0 4.52e-01 70.6% 71.8%
3254634 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.65 41.0 4.33e-01 94.1% 72.0%
3800967 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.64 39.0 4.26e-01 92.9% 74.3%
3581513 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.64 40.0 4.11e-01 94.1% 66.3%
3877833 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.63 41.0 4.21e-01 96.5% 70.0%
158750 4357.1.1.2 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_1 0.62 38.0 3.69e-01 95.3% 53.5%
3575893 3459.1.1.1 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.62 43.0 4.15e-01 80.0% 64.2%
3890078 4357.1.1.2 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_1 0.61 37.0 3.79e-01 94.1% 61.2%
3470449 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.61 43.0 4.45e-01 89.4% 78.8%
3510942 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.61 39.0 4.12e-01 94.1% 73.3%
4108467 3459.1.1.1 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.61 42.0 4.29e-01 85.9% 72.9%
3880308 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.60 37.0 3.81e-01 94.1% 65.0%
3704287 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.59 39.0 4.30e-01 92.9% 87.7%
3214587 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.59 43.0 4.45e-01 89.4% 81.2%
1888657 11.1.1.204 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4982 0.59 42.0 3.78e-01 76.5% 68.3%
3629097 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.58 45.0 4.26e-01 89.4% 70.0%
3236407 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.57 43.0 4.19e-01 89.4% 72.6%
4234211 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.55 44.0 4.42e-01 100.0% 87.1%
4247937 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 42.0 3.87e-01 92.9% 62.7%
4276756 220.1.1.9 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.54 40.0 3.33e-01 80.0% 71.6%
3199325 241.1.1.11 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Med14 0.54 40.0 3.20e-01 81.2% 45.6%
3243117 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.52 44.0 4.17e-01 91.8% 94.0%
3758265 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.52 44.0 4.16e-01 91.8% 94.0%
3592826 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.52 33.0 3.66e-01 94.1% 86.2%
3924545 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.52 44.0 3.95e-01 95.3% 83.3%
3812932 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.51 44.0 3.62e-01 100.0% 67.1%
4934826 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 41.0 2.88e-01 89.4% 82.4%
135088 241.3.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › N domain of copper amine oxidase › N domain of copper amine oxidase › Cu_amine_oxidN1 0.51 35.0 3.56e-01 89.4% 73.3%