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MK448662.1__QBX13599.1__JavanS97_0020__00020
Bact-VirMK448662.1__QBX13599.1__JavanS97_0020__00020
Identity
- Accession:
- MK448662 ↗
- Kingdom:
- phage
Quality
76.7
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-56
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2m6pA00 | 2.20.28.270 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A | 0.63 | 42.0 | 4.49e-01 | 98.2% | 82.6% |
| 3hh2D03 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.61 | 35.0 | 3.95e-01 | 100.0% | 76.9% |
| 6rptC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 45.0 | 3.53e-01 | 100.0% | 39.3% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.60 | 39.0 | 3.86e-01 | 100.0% | 60.7% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.59 | 50.0 | 3.59e-01 | 100.0% | 35.8% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.56 | 42.0 | 3.51e-01 | 81.8% | 87.5% |
| 3m4iA02 | 3.30.1490.440 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.55 | 38.0 | 3.63e-01 | 100.0% | 60.3% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.54 | 39.0 | 3.40e-01 | 100.0% | 47.9% |
| 1hx6B01 | 2.70.9.30 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Viral coat protein p3 | 0.53 | 45.0 | 3.06e-01 | 100.0% | 67.4% |
| 4f4oC03 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 43.0 | 3.74e-01 | 100.0% | 57.3% |
| 2lkzA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 44.0 | 3.93e-01 | 100.0% | 97.6% |
| 3s1tA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.51 | 36.0 | 3.27e-01 | 78.2% | 96.2% |
| 2jmkA00 | 3.30.420.600 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Thermoplasma acidophilum protein TA0956 | 0.50 | 42.0 | 3.48e-01 | 100.0% | 68.2% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3303628 | 822.1.1.3 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_ATXR3 | 0.71 | 43.0 | 4.55e-01 | 100.0% | 68.0% |
| 5050775 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.68 | 47.0 | 3.78e-01 | 100.0% | 36.4% |
| 4158495 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.66 | 51.0 | 4.36e-01 | 100.0% | 52.2% |
| 3227231 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.64 | 42.0 | 4.09e-01 | 100.0% | 60.3% |
| 5025086 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.62 | 53.0 | 5.31e-01 | 100.0% | 94.5% |
| 1779574 | 4012.1.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase | 0.59 | 43.0 | 4.62e-01 | 100.0% | 93.5% |
| 5025087 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.58 | 50.0 | 4.86e-01 | 98.2% | 96.7% |
| 3273420 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.56 | 48.0 | 2.94e-01 | 96.4% | 26.7% |
| 4996769 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 46.0 | 3.60e-01 | 90.9% | 70.0% |
| 3395675 | 223.2.1.20 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 | 0.56 | 40.0 | 2.92e-01 | 76.4% | 57.4% |
| 4028716 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.55 | 45.0 | 3.52e-01 | 98.2% | 59.3% |
| 3998855 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.54 | 44.0 | 4.13e-01 | 100.0% | 74.3% |
| 3440710 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 34.0 | 2.89e-01 | 100.0% | 36.0% |
| 3603150 | 2004.1.1.220 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 | 0.51 | 40.0 | 2.67e-01 | 90.9% | 20.9% |
| 5029435 | 2004.1.1.220 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 | 0.51 | 38.0 | 2.65e-01 | 90.9% | 23.1% |
| 4472427 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.51 | 41.0 | 3.65e-01 | 100.0% | 61.2% |
| 3921782 | 207.1.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 | 0.51 | 35.0 | 2.38e-01 | 76.4% | 61.2% |
| 4023481 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 37.0 | 2.76e-01 | 81.8% | 76.9% |
| 3367439 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.50 | 42.0 | 2.85e-01 | 100.0% | 57.9% |