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MK448662.1__QBX13601.1__JavanS97_0022__00022
Bact-VirMK448662.1__QBX13601.1__JavanS97_0022__00022
Identity
- Accession:
- MK448662 ↗
- Kingdom:
- phage
Quality
92.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-87
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ujrA01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.63 | 41.0 | 4.18e-01 | 81.4% | 68.7% |
| 3ednA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.59 | 38.0 | 3.33e-01 | 82.6% | 41.8% |
| 1p32B00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.56 | 42.0 | 3.33e-01 | 79.1% | 45.6% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 39.0 | 3.26e-01 | 75.6% | 74.8% |
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.54 | 43.0 | 4.06e-01 | 88.4% | 83.8% |
| 3kh5A02 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.54 | 38.0 | 3.32e-01 | 93.0% | 47.8% |
| 1k32A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 45.0 | 3.08e-01 | 100.0% | 94.6% |
| 1hbxA01 | 3.40.1810.10 | Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box | 0.51 | 25.0 | 2.70e-01 | 81.4% | 52.1% |
| 3d9wA02 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.51 | 41.0 | 3.93e-01 | 91.9% | 83.3% |
| 4h5bA00 | 3.30.1460.70 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.50 | 40.0 | 3.42e-01 | 89.5% | 86.8% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3741267 | 207.1.1.454 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › DIPSY | 0.68 | 39.0 | 4.97e-01 | 70.9% | 100.0% |
| 3337215 | 4357.1.1.6 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 | 0.63 | 43.0 | 4.39e-01 | 70.9% | 74.1% |
| 3453009 | 4357.1.1.6 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 | 0.63 | 43.0 | 4.37e-01 | 70.9% | 80.0% |
| 3699899 | 214.1.1.6 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2_2 | 0.62 | 46.0 | 4.14e-01 | 77.9% | 84.2% |
| 5016197 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.62 | 36.0 | 3.32e-01 | 93.0% | 43.6% |
| 3597599 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.61 | 44.0 | 4.27e-01 | 76.7% | 100.0% |
| 4488006 | 2003.1.5.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth | 0.61 | 45.0 | 3.15e-01 | 80.2% | 48.5% |
| 3470449 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.57 | 43.0 | 4.47e-01 | 96.5% | 86.3% |
| 3236407 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.57 | 45.0 | 4.40e-01 | 96.5% | 78.9% |
| 3214587 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.56 | 41.0 | 4.29e-01 | 83.7% | 83.7% |
| 3581513 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.56 | 36.0 | 3.75e-01 | 81.4% | 70.0% |
| 3575893 | 3459.1.1.1 ↗ | beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 | 0.56 | 41.0 | 4.07e-01 | 83.7% | 73.7% |
| 3629097 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.55 | 45.0 | 4.29e-01 | 96.5% | 77.0% |
| 3811668 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 27.0 | 3.46e-01 | 91.9% | 97.5% |
| 3704287 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.53 | 36.0 | 4.06e-01 | 83.7% | 92.3% |
| 3199325 | 241.1.1.11 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Med14 | 0.53 | 40.0 | 3.25e-01 | 83.7% | 55.0% |
| 4661764 | 601.52.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › Flagellar hook-associated protein 1 helical domain › Flagellar hook-associated protein 1 helical domain › FlgK_D1 | 0.51 | 45.0 | 3.01e-01 | 100.0% | 27.7% |
| 3243117 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.51 | 43.0 | 4.18e-01 | 97.7% | 98.0% |
| 222386 | 241.1.1.6 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN | 0.50 | 40.0 | 3.42e-01 | 89.5% | 86.8% |
D2
high
residues 97-160
Domain cluster:
rep: MK448526.1__QBX11067.1__JavanS54_0010__00020__D8-69