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MK448664.1__QBX13627.1__JavanS99_0005__00014
Bact-VirMK448664.1__QBX13627.1__JavanS99_0005__00014
Identity
- Accession:
- MK448664 ↗
- Kingdom:
- phage
Quality
93.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-101
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4q3kB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.62 | 45.0 | 3.40e-01 | 76.5% | 62.4% |
| 3i8oA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.58 | 33.0 | 3.05e-01 | 100.0% | 43.8% |
| 1l8lA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.56 | 40.0 | 3.47e-01 | 74.5% | 84.3% |
| 3e8mA00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.56 | 40.0 | 3.40e-01 | 74.5% | 78.7% |
| 1aukA01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.55 | 44.0 | 2.98e-01 | 86.7% | 98.7% |
| 3umoA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.54 | 43.0 | 3.14e-01 | 89.8% | 42.7% |
| 4iilA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 40.0 | 3.37e-01 | 80.6% | 87.0% |
| 2cdqA01 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.51 | 44.0 | 3.48e-01 | 94.9% | 66.2% |
| 4q1tB01 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.51 | 43.0 | 3.17e-01 | 91.8% | 42.8% |
| 3u7vA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 40.0 | 2.79e-01 | 87.8% | 67.8% |
| 1yx1A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.50 | 39.0 | 2.95e-01 | 83.7% | 51.2% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4955414 | 2004.1.1.343 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 | 0.67 | 49.0 | 3.86e-01 | 76.5% | 45.0% |
| 3968490 | 2484.6.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR › ExbD | 0.63 | 43.0 | 4.63e-01 | 70.4% | 82.4% |
| 4508883 | 2484.6.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR › ExbD | 0.63 | 43.0 | 4.40e-01 | 70.4% | 73.7% |
| 4945105 | 2006.1.1.36 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Put_Phosphatase | 0.59 | 43.0 | 3.35e-01 | 76.5% | 90.7% |
| 3740030 | 7579.1.1.3 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 | 0.58 | 43.0 | 3.20e-01 | 79.6% | 71.4% |
| 5070396 | 2006.1.1.14 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD | 0.58 | 42.0 | 3.14e-01 | 75.5% | 78.0% |
| 5044499 | 2006.1.4.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN | 0.58 | 41.0 | 3.36e-01 | 74.5% | 90.8% |
| None | — | 0.57 | 42.0 | 3.02e-01 | 78.6% | 40.8% | |
| 4296473 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.56 | 42.0 | 3.19e-01 | 79.6% | 84.3% |
| 3387434 | 2484.6.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR › ExbD | 0.56 | 38.0 | 3.99e-01 | 70.4% | 79.8% |
| 3838363 | 2484.6.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR › ExbD | 0.56 | 38.0 | 3.91e-01 | 70.4% | 76.3% |
| 5037715 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.55 | 40.0 | 2.91e-01 | 76.5% | 46.5% |
| 3217638 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 34.0 | 3.86e-01 | 92.9% | 84.0% |
| 3289068 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.54 | 39.0 | 3.33e-01 | 75.5% | 83.0% |
| 5065141 | 2002.1.1.197 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Cgl0159 | 0.54 | 40.0 | 2.81e-01 | 79.6% | 40.0% |
| 3683175 | 2002.1.1.322 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PRMT5, PRMT5_TIM | 0.54 | 42.0 | 3.00e-01 | 84.7% | 64.1% |
| 5077392 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.54 | 43.0 | 2.96e-01 | 85.7% | 43.3% |
| 3280844 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.53 | 43.0 | 3.10e-01 | 89.8% | 39.4% |
| None | — | 0.52 | 39.0 | 2.72e-01 | 79.6% | 45.9% | |
| 3286996 | 2007.5.1.23 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › SGNH | 0.52 | 38.0 | 2.82e-01 | 77.6% | 75.4% |
| 3728417 | 2499.1.1.1 ↗ | a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 | 0.52 | 39.0 | 2.64e-01 | 79.6% | 80.5% |
| 3213553 | 207.1.1.52 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 | 0.52 | 39.0 | 2.91e-01 | 80.6% | 39.8% |
| 151962 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.51 | 42.0 | 2.94e-01 | 88.8% | 62.1% |
| 4296043 | 7531.1.1.0 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like | 0.51 | 42.0 | 2.94e-01 | 90.8% | 85.8% |
| 3842932 | 2002.1.1.63 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_35 | 0.51 | 38.0 | 2.59e-01 | 79.6% | 40.5% |
| 4979218 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.51 | 38.0 | 2.95e-01 | 79.6% | 45.2% |
| 4983500 | 7531.1.1.1 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase | 0.50 | 42.0 | 3.12e-01 | 92.9% | 51.9% |
| 3662087 | 2002.1.1.63 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_35 | 0.50 | 38.0 | 2.55e-01 | 80.6% | 47.9% |