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MK448665.1__QBX13688.1__Javan1_0048__00048
Bact-VirMK448665.1__QBX13688.1__Javan1_0048__00048
Identity
- Accession:
- MK448665 ↗
- Kingdom:
- phage
Quality
70.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-112
Domain cluster:
rep: IMGVR_UViG_2802429591_000003-2802429591-2805863857__D668-760
D2
high
residues 135-198
Domain cluster:
rep: MK448895.1__QBX25797.1__Javan274_0001__00052__D254-330
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07501.18 best | G5 | 47.9 | 1.80e-12 | 100.0% | 94.7% |
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8p2bA01 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.82 | 46.0 | 4.22e-01 | 85.9% | 45.0% |
| 4fumA01 | 2.20.230.10 | Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. | 0.78 | 68.0 | 6.50e-01 | 95.3% | 95.9% |
| 1tm0A01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.77 | 41.0 | 2.99e-01 | 82.8% | 20.1% |
| 4fzqA00 | 2.20.230.10 | Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. | 0.76 | 69.0 | 6.39e-01 | 100.0% | 91.1% |
| 3tipA00 | 2.20.230.10 | Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. | 0.74 | 66.0 | 5.20e-01 | 100.0% | 57.6% |
| 1zbsA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.74 | 35.0 | 3.08e-01 | 81.2% | 30.2% |
| 6j7cA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.72 | 39.0 | 2.85e-01 | 81.2% | 19.9% |
| 2otnB01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.70 | 36.0 | 2.75e-01 | 78.1% | 21.2% |
| 2h3gX01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.70 | 35.0 | 3.14e-01 | 82.8% | 34.1% |
| 2ltjA00 | 2.20.230.10 | Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. | 0.68 | 57.0 | 4.90e-01 | 100.0% | 65.8% |
| 4mt5A02 | 2.60.40.4300 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.64 | 56.0 | 4.70e-01 | 100.0% | 95.5% |
| 1t70A00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.63 | 48.0 | 3.24e-01 | 82.8% | 99.2% |
| 1yr2A02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.63 | 39.0 | 2.49e-01 | 85.9% | 11.8% |
| 3eo5A01 | 2.20.230.10 | Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. | 0.63 | 55.0 | 4.95e-01 | 98.4% | 81.8% |
| 1qy9A02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.61 | 38.0 | 2.83e-01 | 84.4% | 23.9% |
| 2k4nA00 | 3.30.720.70 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.60 | 43.0 | 3.75e-01 | 82.8% | 46.8% |
| 2cx7A00 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.59 | 36.0 | 2.84e-01 | 82.8% | 30.2% |
| 2napA01 | 2.20.25.90 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains | 0.59 | 38.0 | 3.94e-01 | 84.4% | 72.4% |
| 5tu7B01 | 2.20.230.10 | Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. | 0.58 | 49.0 | 4.95e-01 | 95.3% | 100.0% |
| 2lfiA00 | 2.60.40.4300 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 47.0 | 3.95e-01 | 96.9% | 82.0% |
| 3ebtA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 41.0 | 3.29e-01 | 90.6% | 38.2% |
| 1nu3A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 40.0 | 3.19e-01 | 90.6% | 35.9% |
| 3iuzA00 | 3.10.180.50 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › | 0.53 | 42.0 | 2.86e-01 | 98.4% | 30.9% |
| 2obaA00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.52 | 41.0 | 3.43e-01 | 89.1% | 91.7% |
| 2dj6B00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.51 | 40.0 | 3.40e-01 | 89.1% | 92.2% |
| 8p2aA01 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.51 | 41.0 | 3.70e-01 | 87.5% | 82.8% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.50 | 31.0 | 2.25e-01 | 92.2% | 20.2% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.50 | 33.0 | 3.33e-01 | 89.1% | 68.3% |
| 3jygA00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.50 | 39.0 | 2.94e-01 | 89.1% | 93.9% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3989719 | 706.2.1.0 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G | 0.98 | 65.0 | 7.85e-01 | 92.2% | 97.8% |
| 3988836 | 706.2.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › G5 | 0.92 | 76.0 | 7.82e-01 | 85.9% | 100.0% |
| 4055918 | 706.2.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › G5 | 0.87 | 80.0 | 7.59e-01 | 100.0% | 97.3% |
| 4525357 | 706.2.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › G5 | 0.86 | 80.0 | 6.03e-01 | 100.0% | 52.1% |
| 4132478 | 706.2.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › G5 | 0.84 | 79.0 | 6.74e-01 | 100.0% | 78.9% |
| 4547123 | 706.2.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › G5 | 0.82 | 71.0 | 6.89e-01 | 93.8% | 98.6% |
| 5029720 | 268.1.1.0 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related | 0.82 | 44.0 | 3.74e-01 | 81.2% | 34.0% |
| 3027346 | 706.2.1.2 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G | 0.82 | 75.0 | 5.87e-01 | 100.0% | 80.5% |
| 4031475 | 706.2.1.2 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G | 0.80 | 74.0 | 4.51e-01 | 100.0% | 20.5% |
| 866038 | 706.2.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › G5 | 0.76 | 69.0 | 6.39e-01 | 100.0% | 91.1% |
| 4209937 | 706.2.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › G5 | 0.76 | 71.0 | 6.68e-01 | 100.0% | 96.0% |
| 4618992 | 706.2.1.2 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G | 0.76 | 67.0 | 4.40e-01 | 95.3% | 30.0% |
| 4071921 | 706.2.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › G5 | 0.73 | 68.0 | 5.03e-01 | 100.0% | 46.7% |
| 3607793 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.72 | 39.0 | 2.41e-01 | 79.7% | 10.1% |
| 4927436 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 37.0 | 3.05e-01 | 81.2% | 29.1% |
| 1682689 | 706.2.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › G5 | 0.68 | 57.0 | 5.37e-01 | 100.0% | 89.0% |
| 2583528 | 706.2.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › G5 | 0.67 | 59.0 | 5.37e-01 | 98.4% | 84.5% |
| 3930408 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.65 | 36.0 | 3.42e-01 | 81.2% | 42.5% |
| 4438791 | 706.2.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › G5 | 0.65 | 46.0 | 5.09e-01 | 89.1% | 96.0% |
| 860411 | 706.2.1.3 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › SasG_E | 0.64 | 47.0 | 5.11e-01 | 92.2% | 100.0% |
| 3989763 | 706.2.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › G5 | 0.63 | 54.0 | 4.19e-01 | 100.0% | 48.0% |
| 185213 | 706.2.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › G5 | 0.63 | 55.0 | 5.09e-01 | 98.4% | 88.9% |
| 4436435 | 706.2.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › G5 | 0.62 | 52.0 | 4.17e-01 | 96.9% | 48.3% |
| 3989884 | 706.2.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › G5 | 0.59 | 44.0 | 4.52e-01 | 79.7% | 100.0% |
| 4662006 | 706.2.1.2 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G | 0.58 | 48.0 | 3.98e-01 | 100.0% | 58.5% |
| 3908974 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 39.0 | 2.84e-01 | 95.3% | 24.1% |
| 4965539 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.57 | 43.0 | 3.13e-01 | 84.4% | 92.5% |
| 139855 | 240.1.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › YbbR | 0.55 | 47.0 | 4.13e-01 | 100.0% | 89.0% |
| 4030677 | 1116.1.1.0 ↗ | a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain | 0.54 | 36.0 | 2.87e-01 | 93.8% | 30.7% |
| 1725505 | 11.24.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › N-terminal Ig-like domain in baseplate protein ORF48 › N-terminal Ig-like domain in baseplate protein ORF48 › BppU_N | 0.53 | 42.0 | 3.40e-01 | 87.5% | 57.4% |
| 4290179 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.52 | 42.0 | 3.65e-01 | 93.8% | 79.0% |
| 4882997 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.51 | 38.0 | 3.16e-01 | 84.4% | 67.5% |
| 4120808 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.51 | 41.0 | 3.71e-01 | 95.3% | 89.5% |
| 4369517 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.51 | 41.0 | 3.84e-01 | 95.3% | 100.0% |
| 3334761 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.50 | 30.0 | 2.67e-01 | 84.4% | 36.8% |
| 4283240 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.50 | 41.0 | 3.82e-01 | 95.3% | 98.8% |
| 4324087 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.50 | 40.0 | 3.65e-01 | 95.3% | 88.4% |
| 4590230 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.50 | 40.0 | 3.68e-01 | 93.8% | 100.0% |
D3
high
residues 220-333