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MK448679.1__QBX14418.1__Javan137_0031__00025
Bact-VirMK448679.1__QBX14418.1__Javan137_0031__00025
Identity
- Accession:
- MK448679 ↗
- Kingdom:
- phage
Quality
93.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-52
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6v7xB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 53.0 | 5.24e-01 | 82.7% | 66.1% |
| 3mn2A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.75 | 53.0 | 4.18e-01 | 75.0% | 37.0% |
| 5xe7A01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.73 | 49.0 | 3.63e-01 | 75.0% | 26.1% |
| 7w5gA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.73 | 65.0 | 3.91e-01 | 100.0% | 30.7% |
| 3v1vA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.73 | 67.0 | 4.03e-01 | 100.0% | 33.8% |
| 8gr7A01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.72 | 64.0 | 3.93e-01 | 100.0% | 34.3% |
| 3osgA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 50.0 | 4.79e-01 | 84.6% | 66.7% |
| 4mc3A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.69 | 62.0 | 3.85e-01 | 100.0% | 35.2% |
| 8h6qD01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.69 | 60.0 | 3.71e-01 | 100.0% | 34.9% |
| 2qtlA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.68 | 47.0 | 3.32e-01 | 73.1% | 93.5% |
| 2p0wA03 | 1.10.10.390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.66 | 50.0 | 4.95e-01 | 82.7% | 83.3% |
| 3go5A04 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 48.0 | 4.55e-01 | 80.8% | 66.7% |
| 1ignB02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 47.0 | 3.95e-01 | 80.8% | 51.1% |
| 1f20A01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.63 | 47.0 | 3.31e-01 | 80.8% | 89.0% |
| 4didB01 | 1.20.58.450 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog | 0.62 | 56.0 | 4.30e-01 | 100.0% | 71.1% |
| 2g9wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 46.0 | 4.28e-01 | 80.8% | 64.2% |
| 1d0qA00 | 3.90.580.10 | Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain | 0.62 | 44.0 | 3.55e-01 | 75.0% | 71.6% |
| 6k8nA02 | 1.10.290.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 | 0.62 | 44.0 | 3.31e-01 | 75.0% | 79.8% |
| 2jscB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 40.0 | 3.61e-01 | 80.8% | 46.3% |
| 4d3pA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.59 | 41.0 | 2.97e-01 | 73.1% | 71.4% |
| 6f8hC00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.57 | 48.0 | 4.02e-01 | 96.2% | 84.9% |
| 3tqnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 41.0 | 3.66e-01 | 80.8% | 61.6% |
| 4evfA02 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.51 | 36.0 | 3.34e-01 | 80.8% | 74.3% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4020888 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.75 | 62.0 | 4.10e-01 | 88.5% | 24.1% |
| 4022241 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.73 | 67.0 | 4.33e-01 | 100.0% | 48.4% |
| 4072618 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.73 | 64.0 | 3.86e-01 | 98.1% | 32.2% |
| 4003662 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.73 | 51.0 | 4.29e-01 | 86.5% | 43.3% |
| 4003818 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 53.0 | 4.32e-01 | 88.5% | 42.1% |
| 1086728 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.73 | 67.0 | 4.03e-01 | 100.0% | 33.5% |
| 3836074 | 141.1.1.4 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_synth_C | 0.72 | 63.0 | 3.81e-01 | 98.1% | 32.8% |
| 4569633 | 141.1.1.4 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_synth_C | 0.72 | 63.0 | 3.83e-01 | 100.0% | 30.9% |
| 4483900 | 141.1.1.4 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_synth_C | 0.71 | 62.0 | 3.78e-01 | 100.0% | 31.9% |
| 3248755 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.71 | 49.0 | 4.21e-01 | 80.8% | 44.7% |
| 5082581 | 101.1.2.89 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR | 0.69 | 48.0 | 4.76e-01 | 80.8% | 69.1% |
| 5056132 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.68 | 52.0 | 3.85e-01 | 82.7% | 66.2% |
| 4363165 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 46.0 | 4.33e-01 | 75.0% | 56.9% |
| 1031323 | 101.1.1.276 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding, Myb_DNA-bind_6 | 0.66 | 46.0 | 4.36e-01 | 82.7% | 59.1% |
| 3829115 | 101.1.1.270 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 | 0.65 | 47.0 | 4.42e-01 | 86.5% | 63.1% |
| 3731562 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.65 | 55.0 | 3.34e-01 | 96.2% | 24.9% |
| 3395053 | 101.1.2.57 ↗ | alpha arrays › HTH › HTH › winged helix domain › EAP30 | 0.63 | 45.0 | 4.13e-01 | 80.8% | 57.1% |
| 4981109 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 45.0 | 4.49e-01 | 80.8% | 76.4% |
| 4988024 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 45.0 | 4.38e-01 | 80.8% | 70.0% |
| 3494294 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 43.0 | 3.88e-01 | 80.8% | 53.4% |
| 3509159 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.58 | 42.0 | 4.09e-01 | 92.3% | 71.7% |
| 5023072 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 38.0 | 4.09e-01 | 75.0% | 90.0% |
| 4976486 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 46.0 | 4.46e-01 | 96.2% | 88.3% |