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MK448680.1__QBX14491.1__Javan139_0049__00006
Bact-VirMK448680.1__QBX14491.1__Javan139_0049__00006
Identity
- Accession:
- MK448680 ↗
- Kingdom:
- phage
Quality
93.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-64
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.73 | 56.0 | 4.94e-01 | 84.6% | 61.5% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.70 | 48.0 | 4.25e-01 | 100.0% | 46.9% |
| 3ehfB01 | 6.10.250.2870 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.69 | 52.0 | 4.11e-01 | 80.8% | 44.2% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.66 | 49.0 | 3.72e-01 | 80.8% | 37.9% |
| 2x2vA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.65 | 48.0 | 4.42e-01 | 78.8% | 64.7% |
| 3ehfD01 | 1.20.5.1930 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.64 | 51.0 | 4.77e-01 | 86.5% | 74.6% |
| 1jb0F00 | 1.10.8.110 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Photosystem I, reaction centre, subunit PsaF | 0.63 | 49.0 | 3.68e-01 | 88.5% | 36.2% |
| 2oexA02 | 1.20.140.50 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › alix/aip1 like domains | 0.63 | 54.0 | 3.59e-01 | 94.2% | 78.7% |
| 4o6kA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.54 | 44.0 | 3.44e-01 | 100.0% | 97.8% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3470215 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.80 | 66.0 | 6.69e-01 | 90.4% | 100.0% |
| 3971484 | 5063.1.1.2 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › MadL | 0.79 | 69.0 | 5.30e-01 | 98.1% | 47.8% |
| 3930750 | 142.1.1.36 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › C_tripleX | 0.75 | 62.0 | 5.58e-01 | 100.0% | 66.7% |
| 3570117 | 375.6.1.2 ↗ | few secondary structure elements › Rubredoxin-like › FlhC-like › FlhC-like › PF31275 | 0.75 | 51.0 | 4.86e-01 | 71.2% | 61.7% |
| 3489682 | 198.1.1.3 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 | 0.74 | 59.0 | 5.26e-01 | 88.5% | 62.7% |
| 3505989 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.73 | 57.0 | 4.63e-01 | 88.5% | 44.8% |
| 3520309 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.73 | 57.0 | 5.11e-01 | 88.5% | 62.7% |
| 3287592 | 3443.1.1.0 ↗ | alpha duplicates or obligate multimers › Get5 carboxyl domain › Get5 carboxyl domain › Get5 carboxyl domain | 0.71 | 52.0 | 5.37e-01 | 80.8% | 80.0% |
| 4937556 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.70 | 55.0 | 5.30e-01 | 86.5% | 73.3% |
| 3617495 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.69 | 56.0 | 4.85e-01 | 92.3% | 58.2% |
| 3245804 | 223.2.1.43 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_M | 0.66 | 55.0 | 3.83e-01 | 90.4% | 99.4% |
| 3629860 | 223.2.1.43 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_M | 0.64 | 57.0 | 4.03e-01 | 100.0% | 47.8% |
| 3308261 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.63 | 43.0 | 4.26e-01 | 71.2% | 72.7% |
| 3597506 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.58 | 48.0 | 4.29e-01 | 94.2% | 65.3% |
| 4180835 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.55 | 47.0 | 4.35e-01 | 100.0% | 77.1% |