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MK448695.1__QBX15329.1__Javan181_0037__00037

Bact-Vir

MK448695.1__QBX15329.1__Javan181_0037__00037

Identity

Accession:
MK448695 ↗
Kingdom:
phage

Quality

81.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan181

TaxID: 2548029

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-170
PDB
Domain cluster: rep: term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00301__D1-46_70-101_150-193
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01520.24 best Amidase_3 54.0 3.00e-14 99.4% 98.3%
D2 high residues 327-488
PDB
Domain cluster: rep: OL774877.1__UJH95051.1__MissG1_0001__00001__D3-139
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05257.23 best CHAP 37.0 5.60e-09 56.8% 93.8%
D3 medium residues 202-261
PDB
Domain cluster: rep: LR596903.1__VUE37406.1__X__00018__D159-209
D4 medium residues 270-312
PDB
Domain cluster: rep: IMGVR_UViG_3300029305_005928-3300029305-Ga0307249_101033452__D259-301
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01476.27 best LysM 53.7 2.10e-14 97.7% 95.3%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b8vA02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.88 81.0 6.65e-01 100.0% 60.3%
5c8qB02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.86 76.0 7.50e-01 100.0% 93.5%
4b8vA03 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.82 71.0 6.88e-01 100.0% 87.8%
2mkxA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.79 66.0 6.33e-01 100.0% 82.4%
2mtzA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.79 66.0 6.34e-01 100.0% 84.0%
2djpA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.79 68.0 5.69e-01 100.0% 55.8%
1e0gA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.77 63.0 6.19e-01 100.0% 85.4%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 65.0 5.10e-01 100.0% 53.4%
3b7hA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 53.0 4.50e-01 88.4% 73.7%
3mnlB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 55.0 3.61e-01 95.3% 26.9%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 54.0 3.59e-01 97.7% 22.3%
2ictA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 49.0 4.16e-01 88.4% 65.4%
6hn7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 4.24e-01 93.0% 70.8%
7e1lB01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 50.0 3.33e-01 100.0% 23.6%
2a19A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.57 42.0 3.50e-01 83.7% 67.1%
ECOD (95)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3974521 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.96 88.0 7.70e-01 100.0% 70.0%
3969916 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.95 87.0 7.17e-01 100.0% 60.0%
3501971 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.95 87.0 7.63e-01 100.0% 70.0%
4461167 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.95 86.0 7.34e-01 100.0% 64.6%
3381619 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.95 86.0 5.05e-01 100.0% 14.3%
4216124 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.95 87.0 8.62e-01 100.0% 95.6%
3985839 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.95 86.0 7.14e-01 100.0% 60.0%
3838194 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.95 86.0 8.47e-01 100.0% 93.3%
4157099 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.95 87.0 8.35e-01 100.0% 89.6%
3963287 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 82.0 8.46e-01 95.3% 100.0%
4137479 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 87.0 6.75e-01 100.0% 50.6%
4249176 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 85.0 7.48e-01 100.0% 70.0%
4491522 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 86.0 7.58e-01 100.0% 71.7%
3464064 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 85.0 6.59e-01 100.0% 49.4%
4118675 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 84.0 8.32e-01 100.0% 93.3%
3248434 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 85.0 8.10e-01 100.0% 91.8%
3898121 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 85.0 7.69e-01 100.0% 76.4%
3655335 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 84.0 5.45e-01 100.0% 25.5%
4448562 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 84.0 7.64e-01 100.0% 76.4%
3981327 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 85.0 7.82e-01 100.0% 79.6%
4404011 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 84.0 6.96e-01 100.0% 60.0%
4390103 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 86.0 7.54e-01 100.0% 71.7%
3452845 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 84.0 7.61e-01 100.0% 76.4%
3165071 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.92 84.0 7.61e-01 100.0% 76.4%
3641672 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.92 83.0 6.82e-01 100.0% 57.3%
3417561 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.92 85.0 4.99e-01 100.0% 14.6%
3320955 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.92 83.0 7.16e-01 100.0% 66.2%
2124917 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.92 85.0 5.53e-01 100.0% 26.7%
2047861 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.92 85.0 7.55e-01 100.0% 74.1%
3458171 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.92 84.0 7.19e-01 100.0% 66.2%
3426433 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.92 84.0 7.39e-01 100.0% 71.7%
3821115 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.92 82.0 6.47e-01 100.0% 51.8%
3234671 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.91 85.0 7.70e-01 100.0% 78.2%
3365578 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.91 83.0 6.59e-01 100.0% 61.3%
1758716 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 81.0 7.57e-01 100.0% 82.7%
4680476 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 83.0 6.89e-01 100.0% 61.4%
3349612 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.90 78.0 7.41e-01 100.0% 82.0%
4022922 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 83.0 7.59e-01 100.0% 78.2%
3413453 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 81.0 7.70e-01 100.0% 86.0%
3337080 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.90 81.0 7.20e-01 100.0% 71.7%
3636417 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.89 82.0 7.56e-01 100.0% 84.9%
3655928 101.15.1.13 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK 0.89 81.0 6.03e-01 100.0% 46.0%
3711427 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.89 76.0 6.44e-01 100.0% 59.4%
3698672 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.89 76.0 5.61e-01 100.0% 39.0%
3191020 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.89 81.0 7.13e-01 100.0% 78.3%
3303205 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 80.0 7.13e-01 100.0% 75.0%
3324708 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 79.0 7.07e-01 100.0% 71.7%
3165082 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 80.0 7.63e-01 100.0% 86.0%
2074716 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 81.0 7.58e-01 100.0% 84.3%
4277578 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 80.0 7.61e-01 100.0% 86.0%
2124476 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 79.0 5.46e-01 100.0% 31.9%
3190144 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 80.0 7.67e-01 100.0% 87.8%
3598919 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.88 75.0 4.59e-01 100.0% 17.1%
4468802 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.88 78.0 6.33e-01 100.0% 54.4%
3185732 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 76.0 7.09e-01 100.0% 89.1%
3964920 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 75.0 6.75e-01 100.0% 70.7%
4662825 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 79.0 6.82e-01 100.0% 69.2%
4149501 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 79.0 7.52e-01 100.0% 86.0%
3604763 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.87 74.0 5.89e-01 100.0% 48.2%
3367888 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.87 77.0 6.55e-01 100.0% 68.6%
4069716 101.15.1.14 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 0.87 78.0 5.54e-01 100.0% 38.3%
3592257 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.87 68.0 4.26e-01 100.0% 17.2%
3903953 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 74.0 7.10e-01 100.0% 82.0%
3691758 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.87 79.0 7.25e-01 100.0% 81.8%
3456918 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 78.0 5.83e-01 100.0% 43.0%
3261110 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.86 75.0 7.00e-01 100.0% 92.6%
3810505 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 76.0 5.01e-01 100.0% 26.1%
3186054 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 77.0 7.31e-01 100.0% 84.0%
3720941 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.85 63.0 6.91e-01 81.4% 97.1%
3989756 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.85 74.0 7.21e-01 100.0% 95.8%
3846469 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.85 76.0 5.89e-01 100.0% 47.8%
3240624 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.85 76.0 6.97e-01 100.0% 78.2%
4492966 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.84 75.0 6.92e-01 100.0% 78.2%
3182365 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.84 76.0 7.05e-01 100.0% 81.1%
3925474 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.84 75.0 7.16e-01 100.0% 86.0%
3691772 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.84 75.0 6.90e-01 100.0% 78.2%
3946658 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.84 76.0 6.39e-01 100.0% 62.9%
3247196 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.84 75.0 6.67e-01 100.0% 71.7%
3716764 101.15.1.12 ↗ alpha arrays › HTH › LysM domain › LysM domain › PF30403 0.84 75.0 6.66e-01 100.0% 81.7%
3517460 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.83 73.0 6.78e-01 100.0% 78.2%
1759182 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.83 71.0 6.80e-01 100.0% 84.3%
4128043 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.83 73.0 7.26e-01 100.0% 95.6%
4008890 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.82 73.0 6.71e-01 100.0% 85.5%
3611431 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.82 72.0 6.46e-01 100.0% 81.7%
4015813 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.82 70.0 6.38e-01 100.0% 73.3%
3720958 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.82 71.0 6.85e-01 100.0% 86.0%
2042916 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.82 71.0 6.65e-01 100.0% 79.6%
3595402 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.82 65.0 6.47e-01 88.4% 93.3%
3355077 101.15.1.13 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK 0.82 70.0 6.52e-01 100.0% 80.0%
3250125 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.81 72.0 6.28e-01 100.0% 69.2%
3338947 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.81 71.0 6.22e-01 100.0% 67.7%
3375922 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.81 65.0 4.95e-01 100.0% 38.1%
3306283 101.15.1.8 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_NFP 0.79 67.0 5.95e-01 100.0% 66.2%
3457416 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.79 70.0 6.25e-01 100.0% 71.7%
3838186 101.15.1.12 ↗ alpha arrays › HTH › LysM domain › LysM domain › PF30403 0.73 63.0 5.23e-01 100.0% 57.5%