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MK448700.1__QBX15538.1__Javan191_0007__00007

Bact-Vir

MK448700.1__QBX15538.1__Javan191_0007__00007

Identity

Accession:
MK448700 ↗
Kingdom:
phage

Quality

85.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-59
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.88 62.0 5.86e-01 92.0% 63.8%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 58.0 5.40e-01 98.0% 61.9%
1zq3P00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 66.0 5.94e-01 100.0% 67.6%
1j5yA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 62.0 5.66e-01 100.0% 67.2%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 57.0 5.81e-01 100.0% 81.2%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 54.0 4.44e-01 92.0% 41.1%
8e9gE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.77 62.0 5.74e-01 92.0% 69.8%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 55.0 5.72e-01 98.0% 86.7%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 57.0 4.21e-01 96.0% 32.3%
4ch7A01 1.10.10.2890 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.76 60.0 4.52e-01 96.0% 37.1%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 54.0 4.98e-01 98.0% 59.1%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 56.0 5.05e-01 100.0% 61.2%
1b72A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 62.0 5.56e-01 100.0% 69.1%
2e19A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 57.0 5.88e-01 100.0% 93.6%
1le8A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 59.0 5.87e-01 100.0% 86.8%
2llkA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 53.0 5.65e-01 96.0% 100.0%
7ar7E01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.71 58.0 5.45e-01 94.0% 73.0%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 61.0 5.59e-01 100.0% 74.2%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 55.0 4.94e-01 96.0% 60.6%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 53.0 5.49e-01 96.0% 93.6%
2ld5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 58.0 5.26e-01 96.0% 70.1%
3f8mA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 57.0 5.18e-01 100.0% 69.2%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 53.0 4.01e-01 100.0% 35.0%
2da4A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 58.0 5.39e-01 98.0% 74.2%
2mw8A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 57.0 5.21e-01 100.0% 71.6%
2ffhA03 1.10.260.30 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › Signal recognition particle, SRP54 subunit, M-domain 0.68 58.0 4.67e-01 100.0% 49.0%
2jt1A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 5.05e-01 98.0% 66.2%
2r3sB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 4.40e-01 100.0% 51.9%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 58.0 5.62e-01 100.0% 89.1%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.66 55.0 4.82e-01 98.0% 75.9%
3ic9A02 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.66 47.0 4.20e-01 76.0% 88.6%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 56.0 5.14e-01 100.0% 80.9%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 55.0 4.86e-01 100.0% 64.0%
2f2cA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 55.0 4.33e-01 98.0% 47.2%
2kt0A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 50.0 5.09e-01 96.0% 93.6%
3lstA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.07e-01 100.0% 48.8%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 4.14e-01 100.0% 46.8%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 54.0 4.03e-01 100.0% 41.4%
3r4kB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.44e-01 92.0% 68.3%
2cqqA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 50.0 4.67e-01 100.0% 71.6%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 53.0 4.56e-01 100.0% 61.3%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 54.0 4.97e-01 100.0% 97.0%
2au3A04 1.20.50.30 Mainly Alpha › Up-down Bundle › Pheromone ER-1 › 0.61 46.0 4.53e-01 84.0% 76.4%
2di3A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 53.0 4.68e-01 100.0% 68.0%
4pswA03 1.10.10.390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 49.0 4.82e-01 98.0% 88.9%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 50.0 3.82e-01 96.0% 79.2%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 4.41e-01 100.0% 67.5%
6hyyA02 1.10.150.210 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 0.59 43.0 4.05e-01 80.0% 77.8%
1irxA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 47.0 4.04e-01 100.0% 84.9%
2fd5A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 43.0 4.41e-01 96.0% 91.7%
2awiA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 42.0 3.99e-01 90.0% 82.1%
3u3wA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 41.0 3.74e-01 90.0% 85.5%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4159098 2498.1.1.29 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 0.84 68.0 4.65e-01 100.0% 27.0%
5000282 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 66.0 5.09e-01 94.0% 41.9%
3978848 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 66.0 5.48e-01 100.0% 52.9%
4097436 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 72.0 6.57e-01 100.0% 76.9%
3398009 101.1.1.112 alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.77 66.0 5.44e-01 96.0% 67.8%
3944885 101.1.1.355 alpha arrays › HTH › HTH › Three-helical HTH › DUF2857 0.77 67.0 6.19e-01 100.0% 80.0%
4949368 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 68.0 6.59e-01 100.0% 89.1%
5025032 101.1.1.542 alpha arrays › HTH › HTH › Three-helical HTH › DUF790 0.76 67.0 6.73e-01 100.0% 98.0%
3266463 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 66.0 6.49e-01 100.0% 94.5%
3655985 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.75 60.0 4.39e-01 86.0% 39.2%
3669646 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.75 63.0 6.14e-01 100.0% 85.5%
3574083 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.75 61.0 6.43e-01 96.0% 100.0%
4997853 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 58.0 5.86e-01 96.0% 86.0%
3424245 101.1.1.269 alpha arrays › HTH › HTH › Three-helical HTH › DUF7769 0.75 63.0 5.96e-01 96.0% 78.3%
3445817 101.1.1.269 alpha arrays › HTH › HTH › Three-helical HTH › DUF7769 0.75 60.0 6.29e-01 92.0% 100.0%
3216569 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.74 62.0 6.01e-01 100.0% 83.6%
4068007 101.1.2.233 alpha arrays › HTH › HTH › winged helix domain › NirdL-like_HTH 0.74 59.0 5.32e-01 98.0% 62.9%
3218952 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.74 61.0 5.85e-01 100.0% 79.3%
5011414 101.1.2.233 alpha arrays › HTH › HTH › winged helix domain › NirdL-like_HTH 0.74 59.0 5.59e-01 98.0% 73.3%
3219867 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 58.0 4.84e-01 96.0% 50.6%
3932555 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.74 61.0 5.27e-01 98.0% 60.0%
3442515 101.1.1.269 alpha arrays › HTH › HTH › Three-helical HTH › DUF7769 0.74 64.0 5.47e-01 100.0% 61.3%
3649560 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.74 60.0 4.82e-01 100.0% 46.0%
4599923 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 61.0 5.46e-01 98.0% 65.7%
3886164 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.73 57.0 5.78e-01 96.0% 86.0%
3493693 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.73 62.0 5.55e-01 100.0% 67.1%
3751844 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.73 62.0 5.00e-01 100.0% 49.5%
4992012 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 64.0 6.06e-01 100.0% 90.0%
1316682 101.1.2.233 alpha arrays › HTH › HTH › winged helix domain › NirdL-like_HTH 0.73 56.0 5.25e-01 96.0% 68.9%
4201679 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 63.0 5.28e-01 98.0% 58.8%
3366636 101.1.1.269 alpha arrays › HTH › HTH › Three-helical HTH › DUF7769 0.73 61.0 5.63e-01 100.0% 73.8%
3579029 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.73 61.0 5.27e-01 100.0% 60.3%
3947986 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.72 61.0 5.77e-01 96.0% 78.3%
4356453 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.72 59.0 4.77e-01 90.0% 47.4%
3257506 101.1.1.333 alpha arrays › HTH › HTH › Three-helical HTH › ATG29_N 0.72 60.0 5.27e-01 100.0% 62.7%
3271882 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 59.0 4.80e-01 100.0% 48.4%
3389605 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.72 53.0 3.49e-01 82.0% 51.1%
4345364 3697.1.1.1 alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain › 2Fe-2S_thioredx 0.72 56.0 5.32e-01 100.0% 73.3%
3994528 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.71 59.0 5.61e-01 100.0% 78.3%
3882807 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.71 59.0 5.03e-01 100.0% 57.5%
3963650 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 57.0 5.75e-01 90.0% 90.0%
3662725 101.1.1.217 alpha arrays › HTH › HTH › Three-helical HTH › RsmI_C 0.71 58.0 5.69e-01 96.0% 85.5%
4033200 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 52.0 5.49e-01 80.0% 88.9%
4941656 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 60.0 5.18e-01 96.0% 63.7%
3461216 101.1.1.269 alpha arrays › HTH › HTH › Three-helical HTH › DUF7769 0.71 61.0 5.41e-01 100.0% 66.7%
3542830 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.70 58.0 5.37e-01 100.0% 72.3%
4088927 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.70 60.0 4.20e-01 100.0% 32.1%
4097425 4973.1.1.1 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.69 56.0 5.16e-01 90.0% 70.8%
3973148 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.68 59.0 4.90e-01 98.0% 59.1%
5036478 613.1.1.1 alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c 0.68 58.0 3.83e-01 100.0% 22.7%
3500206 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 55.0 4.94e-01 100.0% 65.3%
5021067 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 55.0 4.44e-01 98.0% 45.7%
3277968 101.1.1.217 alpha arrays › HTH › HTH › Three-helical HTH › RsmI_C 0.67 53.0 5.24e-01 96.0% 83.6%
5051992 613.1.1.1 alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c 0.67 56.0 3.65e-01 98.0% 20.9%
4944587 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.67 55.0 4.46e-01 98.0% 48.6%
4165729 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.66 53.0 3.67e-01 88.0% 26.7%
3455418 101.1.1.65 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.66 57.0 4.75e-01 100.0% 64.4%
4982919 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.65 56.0 4.34e-01 100.0% 43.5%
3241028 101.1.2.649 alpha arrays › HTH › HTH › winged helix domain › PF28730 0.65 57.0 4.75e-01 98.0% 65.9%
4046675 4973.1.1.1 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.65 54.0 4.59e-01 96.0% 56.5%
4507511 2006.1.3.6 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.63 52.0 3.59e-01 98.0% 25.8%
3507798 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 55.0 5.08e-01 100.0% 81.5%
3942057 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.61 47.0 4.62e-01 90.0% 78.2%
3264668 101.1.2.304 alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase 0.60 47.0 4.28e-01 100.0% 62.7%
3764771 101.1.2.365 alpha arrays › HTH › HTH › winged helix domain › DEK_C 0.59 47.0 4.66e-01 100.0% 92.7%
3840404 101.7.1.1 alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.59 46.0 4.54e-01 100.0% 86.7%
3795109 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.59 50.0 5.06e-01 98.0% 100.0%
3515204 4156.1.1.11 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N 0.51 41.0 2.78e-01 100.0% 51.9%