←Back to structures

MK448700.1__QBX15547.1__Javan191_0016__00016

Bact-Vir

MK448700.1__QBX15547.1__Javan191_0016__00016

Identity

Accession:
MK448700 ↗
Kingdom:
phage

Quality

92.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan191

TaxID: 2548039

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-41
PDB
Domain cluster: representative
CATH (70)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2odkA00 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.91 79.0 7.27e-01 100.0% 76.0%
7v5yA01 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.83 70.0 6.48e-01 97.4% 76.5%
2a6qA01 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.82 71.0 6.91e-01 100.0% 90.7%
3ctoD00 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.81 68.0 5.72e-01 97.4% 56.9%
7bwfD01 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.81 69.0 6.50e-01 100.0% 81.2%
3orgA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.79 66.0 4.59e-01 100.0% 29.4%
3g5oA01 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.79 65.0 6.48e-01 100.0% 92.9%
4nocD00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.76 64.0 4.32e-01 100.0% 26.4%
2j9lF01 3.90.1280.20 Alpha Beta › Alpha-Beta Complex › CBS domain Like › 0.76 63.0 5.14e-01 100.0% 50.7%
2o16B00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.75 60.0 4.19e-01 100.0% 27.4%
4esyA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.74 60.0 3.98e-01 100.0% 22.7%
2pfiB01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.73 59.0 4.10e-01 100.0% 26.8%
2yziB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.73 60.0 4.14e-01 100.0% 27.4%
3fioA00 3.90.1280.20 Alpha Beta › Alpha-Beta Complex › CBS domain Like › 0.72 59.0 4.94e-01 100.0% 52.9%
2rc3C00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.70 57.0 4.04e-01 100.0% 28.9%
3fhmA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.70 56.0 3.95e-01 100.0% 27.2%
1o50A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.69 57.0 3.93e-01 100.0% 27.0%
7pvaB01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.69 53.0 3.82e-01 87.2% 31.1%
3kh5A02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.69 54.0 3.84e-01 100.0% 27.9%
3fnaB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.68 55.0 3.93e-01 100.0% 30.1%
1uwvA03 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 52.0 3.78e-01 100.0% 29.9%
4id9A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 49.0 3.16e-01 87.2% 25.1%
1q35A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.66 49.0 3.43e-01 87.2% 32.2%
4c6rA00 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.66 49.0 3.33e-01 87.2% 29.0%
2pe3D01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.65 46.0 2.87e-01 79.5% 13.1%
4c6sA00 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.65 49.0 3.43e-01 89.7% 43.7%
3fd3A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.64 48.0 3.64e-01 87.2% 34.9%
1fzrA00 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.63 48.0 3.45e-01 89.7% 49.6%
5ep9D00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.63 44.0 2.76e-01 76.9% 73.1%
1e6uA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 46.0 2.95e-01 87.2% 20.9%
4p53A01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 50.0 3.34e-01 94.9% 29.0%
3hsiA01 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.62 50.0 3.13e-01 94.9% 62.1%
3fkqA01 3.40.50.10850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Ntrc-like two-domain protein. 0.62 50.0 3.67e-01 94.9% 37.9%
5i2cB01 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.62 45.0 3.07e-01 79.5% 24.0%
4e2xA04 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 45.0 3.59e-01 97.4% 36.4%
3eeqA01 3.40.50.11220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 48.0 3.62e-01 100.0% 34.2%
6qrjA03 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 44.0 3.40e-01 87.2% 33.9%
3waeB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.61 45.0 3.18e-01 87.2% 32.9%
2r47A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 47.0 3.43e-01 100.0% 28.3%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.60 46.0 3.71e-01 100.0% 58.0%
3hftA00 3.20.20.370 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase 0.60 47.0 2.91e-01 92.3% 31.4%
2c4kA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 43.0 3.02e-01 89.7% 26.3%
3clkB01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 45.0 3.33e-01 87.2% 33.6%
3snkA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 44.0 3.30e-01 87.2% 31.9%
2w7tA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.59 42.0 2.67e-01 84.6% 21.2%
1cvrA01 3.40.50.10390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Gingipain r; domain 1 0.58 42.0 3.22e-01 87.2% 39.3%
1npdB01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.58 46.0 3.29e-01 100.0% 65.9%
3hhfA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 42.0 3.34e-01 87.2% 45.5%
2hxwA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 42.0 3.19e-01 87.2% 35.6%
1wl8A00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.58 44.0 2.96e-01 92.3% 21.3%
1ewqB01 3.40.1170.10 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I 0.57 42.0 3.31e-01 100.0% 66.1%
2bfdB02 3.40.50.920 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 45.0 3.35e-01 100.0% 67.2%
2xd3A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 42.0 2.80e-01 87.2% 28.7%
3axfA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 41.0 3.13e-01 89.7% 40.3%
2yzkA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 42.0 2.86e-01 89.7% 42.6%
6a8mA01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.56 40.0 2.82e-01 89.7% 28.7%
6f2mA01 3.30.200.190 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.56 43.0 3.46e-01 100.0% 73.5%
4rxlA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 40.0 3.07e-01 87.2% 39.3%
1atgA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 40.0 3.09e-01 87.2% 38.5%
1hkqA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 2.86e-01 79.5% 68.8%
2jfnA02 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 40.0 3.11e-01 92.3% 50.9%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.54 42.0 2.99e-01 100.0% 24.1%
1l0bA01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.54 40.0 3.11e-01 89.7% 56.1%
4lusB01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.53 46.0 3.11e-01 100.0% 93.3%
5bpdA02 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.53 40.0 2.94e-01 94.9% 79.7%
3kosA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 37.0 3.02e-01 87.2% 43.7%
4em8A00 3.40.1400.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribose 5-phosphate Isomerase B; Chain: A, › Sugar-phosphate isomerase, RpiB/LacA/LacB 0.52 36.0 2.70e-01 87.2% 31.5%
6n2nC03 3.40.50.920 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 38.0 3.00e-01 92.3% 88.3%
2vvpC00 3.40.1400.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribose 5-phosphate Isomerase B; Chain: A, › Sugar-phosphate isomerase, RpiB/LacA/LacB 0.52 42.0 2.93e-01 100.0% 51.3%
3go6A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 38.0 2.42e-01 100.0% 16.4%
ECOD (93)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4169084 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.92 81.0 6.58e-01 100.0% 54.3%
3953259 4267.1.1.0 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like 0.92 81.0 6.94e-01 100.0% 63.3%
3956773 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.91 79.0 6.18e-01 100.0% 47.5%
3287302 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.90 78.0 6.34e-01 100.0% 54.3%
3385734 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.89 78.0 6.57e-01 100.0% 61.5%
3281080 4267.1.1.0 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like 0.88 77.0 6.71e-01 100.0% 65.0%
4992373 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.88 75.0 5.80e-01 100.0% 44.7%
3954634 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.87 72.0 5.63e-01 100.0% 44.0%
3281701 4267.1.1.0 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like 0.86 74.0 6.42e-01 97.4% 63.3%
3979098 4267.1.1.0 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like 0.85 71.0 5.76e-01 100.0% 49.3%
4615399 4267.1.1.0 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like 0.84 71.0 5.68e-01 100.0% 48.8%
4430497 4267.1.1.0 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like 0.84 71.0 7.07e-01 100.0% 97.5%
4115104 4267.1.1.0 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like 0.83 70.0 6.08e-01 100.0% 61.7%
4611720 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.83 72.0 5.71e-01 100.0% 48.8%
4358836 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.83 72.0 5.69e-01 100.0% 48.8%
3588688 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.81 70.0 6.15e-01 100.0% 71.7%
3589433 4267.1.1.0 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like 0.81 67.0 5.84e-01 100.0% 60.0%
2807919 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.81 70.0 6.18e-01 100.0% 69.0%
3973990 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.81 66.0 4.75e-01 100.0% 32.7%
2629018 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.80 69.0 5.27e-01 100.0% 42.4%
2649940 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.80 69.0 6.09e-01 100.0% 66.1%
3788738 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.80 67.0 4.12e-01 100.0% 16.9%
2807885 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.79 67.0 5.29e-01 100.0% 47.1%
4177699 7502.1.1.6 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HisZ_C 0.79 62.0 5.55e-01 87.2% 67.3%
134503 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.79 65.0 5.10e-01 100.0% 42.9%
3895050 2008.1.1.7 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.78 62.0 4.05e-01 89.7% 85.3%
4930759 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.77 61.0 4.26e-01 100.0% 27.4%
3519142 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.77 63.0 4.11e-01 100.0% 21.8%
415017 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.77 64.0 4.93e-01 100.0% 41.8%
312803 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.77 64.0 4.14e-01 100.0% 21.5%
5056283 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.76 63.0 4.38e-01 100.0% 28.5%
3716110 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.76 61.0 3.98e-01 100.0% 20.0%
4951404 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.76 64.0 4.50e-01 100.0% 30.8%
4983375 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.75 63.0 4.50e-01 100.0% 32.2%
3262174 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.75 61.0 4.09e-01 100.0% 23.1%
4967667 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.75 61.0 4.21e-01 100.0% 27.4%
5013766 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.75 61.0 4.20e-01 100.0% 26.4%
4947953 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.75 60.0 4.22e-01 100.0% 28.1%
4986158 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.75 62.0 4.40e-01 100.0% 30.8%
4932072 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.74 62.0 4.38e-01 100.0% 30.8%
3600783 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.74 59.0 4.03e-01 100.0% 24.2%
3461164 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.74 60.0 3.53e-01 100.0% 11.4%
3199093 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.74 60.0 3.98e-01 100.0% 22.4%
3733162 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.74 60.0 3.93e-01 100.0% 21.1%
5073314 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.74 59.0 4.16e-01 100.0% 28.5%
4968391 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.74 60.0 4.13e-01 100.0% 26.4%
5007425 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.73 60.0 4.11e-01 100.0% 26.4%
3722870 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.73 59.0 3.96e-01 100.0% 23.1%
3502386 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.73 59.0 3.91e-01 100.0% 21.8%
4989025 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.73 60.0 4.31e-01 100.0% 32.2%
5056282 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.72 61.0 4.25e-01 100.0% 30.0%
3690580 2484.1.1.223 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27036 0.72 58.0 3.94e-01 100.0% 53.3%
3573644 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.72 58.0 4.29e-01 100.0% 33.6%
5078936 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.72 59.0 4.14e-01 100.0% 28.1%
5059207 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.71 57.0 4.17e-01 100.0% 32.2%
119361 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.71 59.0 4.94e-01 100.0% 52.9%
4948416 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.71 58.0 3.96e-01 100.0% 26.1%
5066041 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.71 57.0 3.98e-01 100.0% 27.4%
4983376 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.71 56.0 3.98e-01 100.0% 28.5%
5080978 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.70 56.0 3.96e-01 100.0% 27.4%
4947952 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.70 57.0 4.06e-01 100.0% 29.6%
5030524 7514.1.1.1 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.70 53.0 3.58e-01 87.2% 44.4%
4933257 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.70 50.0 2.97e-01 82.1% 10.6%
4021176 129.1.1.0 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.69 51.0 3.34e-01 87.2% 18.9%
7272 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.69 57.0 3.95e-01 100.0% 27.5%
4947415 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.69 55.0 3.87e-01 100.0% 27.4%
4096442 7502.1.1.6 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HisZ_C 0.68 55.0 4.90e-01 94.9% 65.0%
3423878 2003.1.1.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.67 50.0 3.95e-01 87.2% 64.4%
3612205 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 50.0 3.84e-01 100.0% 33.9%
4858506 2003.2.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 0.65 48.0 3.31e-01 87.2% 51.6%
5033605 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.64 51.0 3.69e-01 87.2% 37.4%
4079307 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.63 50.0 3.89e-01 100.0% 64.8%
3407618 2007.25.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Rossmann-like domain in Ribosomal protein L1 › Rossmann-like domain in Ribosomal protein L1 › Ribosomal_L1 0.63 47.0 3.76e-01 87.2% 37.8%
4999354 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 49.0 3.41e-01 100.0% 26.9%
4886650 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.62 48.0 4.00e-01 100.0% 74.1%
4029435 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.62 47.0 3.76e-01 100.0% 45.7%
4260111 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.62 45.0 3.59e-01 87.2% 46.3%
4494810 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.62 46.0 3.78e-01 87.2% 42.5%
3905461 148.1.3.371 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › BTB 0.61 46.0 3.55e-01 100.0% 35.8%
5036875 7597.1.1.0 ↗ a/b three-layered sandwiches › Endolysin C-terminal domain › Endolysin C-terminal domain › Endolysin C-terminal domain 0.61 43.0 3.69e-01 87.2% 42.7%
4028581 2003.1.1.38 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › THF_DHG_CYH_C 0.59 45.0 3.06e-01 100.0% 19.5%
4947957 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.59 41.0 2.53e-01 82.1% 11.1%
5037272 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.59 43.0 3.94e-01 87.2% 73.3%
4121236 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.59 45.0 3.72e-01 100.0% 76.4%
4955800 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.59 46.0 3.71e-01 100.0% 71.6%
4520708 2003.1.5.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.58 47.0 2.81e-01 100.0% 11.1%
3739484 2007.25.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Rossmann-like domain in Ribosomal protein L1 › Rossmann-like domain in Ribosomal protein L1 › Ribosomal_L1 0.58 45.0 3.48e-01 94.9% 42.9%
3788651 314.1.1.12 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.58 41.0 2.62e-01 84.6% 46.5%
4462824 2003.1.5.174 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_15 0.58 45.0 2.72e-01 100.0% 10.8%
4932528 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.57 45.0 3.65e-01 100.0% 72.2%
4282909 7502.1.1.3 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HisZ-like 0.57 41.0 3.86e-01 87.2% 67.3%
1520842 7523.1.1.15 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.56 40.0 3.51e-01 87.2% 52.1%
9332 2003.1.5.11 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PARP_regulatory 0.51 38.0 2.44e-01 100.0% 16.2%
D2 medium residues 44-89
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6umqA01 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.62 50.0 3.74e-01 89.1% 74.8%
4ywoA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 43.0 2.95e-01 100.0% 30.7%