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MK448702.1__QBX15659.1__Javan199_0022__00022

Bact-Vir

MK448702.1__QBX15659.1__Javan199_0022__00022

Identity

Accession:
MK448702 ↗
Kingdom:
phage

Quality

92.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-47
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23834.2 best DUF7204 81.8 5.30e-23 100.0% 92.0%
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mheA00 3.30.70.2400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF13773, DUF4170 0.81 70.0 6.06e-01 100.0% 77.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.74 64.0 4.40e-01 100.0% 46.7%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.66 53.0 4.44e-01 100.0% 54.3%
8gk4C02 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.65 53.0 4.39e-01 100.0% 100.0%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.64 50.0 3.59e-01 95.7% 27.7%
1ollA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 57.0 4.47e-01 100.0% 49.5%
2xvlA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.64 55.0 3.91e-01 100.0% 36.7%
1yq2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 56.0 4.20e-01 100.0% 46.1%
1ne6A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 48.0 3.64e-01 100.0% 32.8%
4ehoB03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.63 48.0 3.25e-01 82.6% 74.3%
3cvzB01 3.30.1490.290 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Low molecular weight S-layer protein, domain 1 0.63 51.0 4.24e-01 100.0% 56.6%
1w15A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.63 56.0 4.03e-01 100.0% 37.9%
1sxvA00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.63 50.0 3.63e-01 100.0% 40.0%
1hnfA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 42.0 3.67e-01 100.0% 41.8%
5aa7A00 2.70.50.50 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › chitin-binding protein cbp21 0.63 56.0 3.95e-01 100.0% 33.1%
5e16A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 48.0 3.48e-01 100.0% 29.0%
2vsdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 54.0 4.28e-01 100.0% 48.4%
6se8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 52.0 4.07e-01 100.0% 50.9%
3gm8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 48.0 4.02e-01 100.0% 50.0%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.62 50.0 3.73e-01 100.0% 33.3%
4myjA04 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 47.0 3.49e-01 100.0% 31.0%
6grqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 55.0 4.39e-01 100.0% 52.3%
1v8hA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 53.0 4.06e-01 100.0% 42.5%
1zxqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 54.0 4.07e-01 100.0% 46.7%
2wshA00 3.40.1440.40 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.60 47.0 3.63e-01 100.0% 46.3%
3cu7A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.60 52.0 4.03e-01 100.0% 43.4%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.60 49.0 4.58e-01 100.0% 76.2%
4y0eB00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.60 44.0 2.71e-01 78.3% 48.1%
1k92A02 3.90.1260.10 Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 0.60 48.0 3.10e-01 89.1% 58.6%
3skvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 50.0 3.48e-01 100.0% 27.9%
1jz7A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 52.0 4.01e-01 100.0% 46.2%
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 52.0 3.73e-01 100.0% 37.0%
1zczA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.59 49.0 3.75e-01 100.0% 37.6%
2wngA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 51.0 4.20e-01 100.0% 52.9%
5ujeA01 3.30.1760.10 Alpha Beta › 2-Layer Sandwich › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 0.59 48.0 3.80e-01 100.0% 55.9%
4rz7A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 46.0 3.44e-01 100.0% 33.1%
2kl6A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 51.0 3.91e-01 100.0% 46.3%
1vcaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 51.0 3.84e-01 100.0% 47.3%
1d2oA01 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.57 49.0 3.78e-01 100.0% 44.9%
3eb7A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 51.0 3.42e-01 100.0% 35.4%
2okxA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 48.0 3.32e-01 100.0% 46.4%
3kbrA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 48.0 3.89e-01 100.0% 96.7%
2p8eA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.55 42.0 2.75e-01 97.8% 55.8%
3i7jA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 48.0 2.99e-01 100.0% 39.6%
2hjeA02 2.20.20.100 Mainly Beta › Single Sheet › Anthopleurin-A › LuxQ periplasmic domain, C-terminal subdomain 0.55 49.0 4.64e-01 100.0% 96.3%
2waoA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 44.0 3.50e-01 100.0% 64.0%
3arxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.29e-01 100.0% 36.9%
1ekbB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 47.0 3.62e-01 100.0% 87.2%
4devD01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 43.0 3.34e-01 100.0% 44.0%
7sf2D01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 44.0 3.06e-01 100.0% 26.4%
4gb7A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 47.0 2.77e-01 100.0% 41.8%
1xedC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 47.0 3.64e-01 100.0% 56.2%
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.25e-01 100.0% 53.9%
2e56A00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.05e-01 100.0% 43.1%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3313016 3397.1.1.2 a+b complex topology › Tic22 › Tic22 › Tic22 › DUF3110 0.81 70.0 5.20e-01 100.0% 55.8%
5023115 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.75 60.0 5.33e-01 100.0% 61.5%
3461175 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.73 62.0 4.98e-01 100.0% 55.8%
4985746 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 52.0 4.06e-01 80.4% 35.2%
4438218 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.71 57.0 4.53e-01 100.0% 88.2%
4011630 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.71 46.0 4.91e-01 95.7% 81.6%
4223323 304.44.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › PriA_C 0.69 57.0 4.73e-01 97.8% 100.0%
2559787 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.68 61.0 5.06e-01 100.0% 97.5%
3958896 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.68 56.0 5.24e-01 97.8% 75.0%
5074371 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 52.0 3.71e-01 84.8% 76.6%
4056401 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 59.0 4.94e-01 100.0% 77.5%
5057289 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.67 43.0 4.79e-01 93.5% 85.7%
3967414 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 48.0 4.68e-01 100.0% 70.0%
3493588 223.2.1.32 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.65 51.0 3.62e-01 87.0% 77.2%
1859695 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.65 51.0 4.09e-01 100.0% 42.4%
3900678 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 55.0 4.39e-01 100.0% 47.8%
3776000 11.1.1.178 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.65 58.0 4.49e-01 100.0% 47.4%
5048741 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 49.0 3.79e-01 84.8% 90.9%
5078530 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 50.0 3.86e-01 84.8% 92.4%
3756439 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 56.0 3.92e-01 100.0% 32.1%
4529669 223.2.1.32 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.64 49.0 3.58e-01 87.0% 77.1%
3953385 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.64 43.0 4.47e-01 100.0% 82.5%
3897016 11.1.1.463 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_C17orf99 0.64 56.0 4.45e-01 100.0% 50.0%
3880780 11.1.1.463 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_C17orf99 0.64 56.0 4.37e-01 100.0% 47.4%
3778406 11.1.1.946 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2, Ig_3 0.63 57.0 3.72e-01 100.0% 24.2%
5001430 11.1.1.246 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 0.63 56.0 4.41e-01 100.0% 48.4%
3856234 11.1.1.178 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.63 57.0 3.57e-01 100.0% 20.0%
3959592 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.63 55.0 3.82e-01 100.0% 29.7%
5047920 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 52.0 4.18e-01 100.0% 46.3%
3924084 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 52.0 4.19e-01 100.0% 100.0%
1031012 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.62 49.0 3.62e-01 100.0% 30.6%
3834262 223.2.1.15 a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.62 48.0 3.43e-01 84.8% 77.1%
4976238 11.1.1.32 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Desulfoferrodox 0.62 54.0 4.00e-01 100.0% 37.8%
3721040 4176.1.1.2 a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.61 52.0 3.33e-01 100.0% 18.4%
5003527 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.60 47.0 3.53e-01 100.0% 31.3%
5014000 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.60 51.0 3.70e-01 100.0% 71.1%
5050378 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 49.0 4.01e-01 100.0% 47.8%
4469838 10.32.1.215 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29167 0.59 53.0 3.60e-01 100.0% 38.8%
3477628 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 52.0 3.79e-01 100.0% 38.3%
3848227 223.2.1.15 a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.58 50.0 3.56e-01 100.0% 95.3%
3481499 223.1.1.119 a+b three layers › Profilin-like › sensor domains › sensor domains › Intu_longin_2 0.58 43.0 3.09e-01 84.8% 36.8%
3935475 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 46.0 2.92e-01 91.3% 61.2%
5001166 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.57 42.0 3.24e-01 100.0% 30.4%
3392216 223.2.1.31 a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 0.57 42.0 2.84e-01 84.8% 19.5%
3689809 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 45.0 4.59e-01 100.0% 95.6%
5049343 206.1.3.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.56 49.0 3.45e-01 100.0% 41.7%
3471296 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.56 47.0 3.47e-01 100.0% 42.3%
2833278 302.3.1.1 a+b two layers › Reverse ferredoxin › a+b domain in low-molecular-weight S-layer protein › a+b domain in low-molecular-weight S-layer protein › LMWSLP_N 0.55 41.0 3.55e-01 100.0% 58.2%
3902170 10.3.1.2 beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.54 48.0 3.48e-01 100.0% 36.8%
4129719 10.32.1.215 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29167 0.54 48.0 3.17e-01 100.0% 35.6%
3888080 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 43.0 2.80e-01 100.0% 24.3%
4217727 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 47.0 3.35e-01 100.0% 51.5%