←Back to structures
MK448702.1__QBX15660.1__Javan199_0023__00023
Bact-VirMK448702.1__QBX15660.1__Javan199_0023__00023
Identity
- Accession:
- MK448702 ↗
- Kingdom:
- phage
Quality
90.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-54
Domain cluster:
rep: MK448706.1__QBX15888.1__Javan221_0030__00023__D2-53
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7c2fB01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.72 | 42.0 | 3.63e-01 | 100.0% | 36.0% |
| 4m7dA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 63.0 | 5.91e-01 | 98.1% | 86.2% |
| 4c92G00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 59.0 | 5.30e-01 | 100.0% | 80.0% |
| 3pggA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 59.0 | 5.22e-01 | 100.0% | 80.8% |
| 5mnjH00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.63 | 45.0 | 4.35e-01 | 100.0% | 67.2% |
| 1d3bC00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 55.0 | 5.06e-01 | 100.0% | 83.1% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.63 | 41.0 | 4.00e-01 | 100.0% | 59.0% |
| 2mvzA00 | 2.40.100.10 | Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like | 0.61 | 53.0 | 3.92e-01 | 100.0% | 96.6% |
| 2m6pA00 | 2.20.28.270 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A | 0.61 | 41.0 | 4.34e-01 | 96.2% | 82.6% |
| 1ok0A00 | 2.60.40.20 | Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-amylase inhibitor | 0.60 | 44.0 | 4.01e-01 | 100.0% | 58.1% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.60 | 49.0 | 4.26e-01 | 100.0% | 59.8% |
| 3lkmA02 | 3.20.200.10 | Alpha Beta › Alpha-Beta Barrel › Protein kinase-like fold › MHCK/EF2 kinase | 0.59 | 49.0 | 4.25e-01 | 98.1% | 81.1% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.59 | 49.0 | 3.88e-01 | 100.0% | 45.0% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.58 | 43.0 | 3.94e-01 | 100.0% | 59.2% |
| 2p62A01 | 3.40.50.10620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PH0156-like domains | 0.58 | 50.0 | 3.67e-01 | 100.0% | 61.5% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.58 | 50.0 | 3.86e-01 | 100.0% | 43.3% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.56 | 45.0 | 3.77e-01 | 100.0% | 51.0% |
| 1x4rA01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.55 | 47.0 | 4.21e-01 | 100.0% | 81.0% |
| 1vbkA01 | 3.30.70.1510 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like | 0.55 | 47.0 | 4.12e-01 | 100.0% | 91.6% |
| 3hulA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.52 | 41.0 | 3.39e-01 | 96.2% | 96.5% |
| 4tktA02 | 1.10.1240.100 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.52 | 41.0 | 3.64e-01 | 88.7% | 58.5% |
| 2qqrA02 | 3.10.330.70 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.52 | 42.0 | 4.26e-01 | 96.2% | 100.0% |
| 3nuhB02 | 3.30.300.370 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.52 | 44.0 | 3.47e-01 | 100.0% | 93.4% |
| 1eayD00 | 3.30.70.400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CheY-binding domain of CheA | 0.51 | 42.0 | 3.94e-01 | 100.0% | 98.6% |
| 3mb5A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.50 | 43.0 | 4.14e-01 | 100.0% | 90.3% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5017559 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.85 | 75.0 | 7.01e-01 | 98.1% | 96.9% |
| 5000654 | 247.1.1.30 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 | 0.70 | 48.0 | 2.94e-01 | 86.8% | 12.3% |
| 4053783 | 247.1.1.33 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, Lactamase_B_2, Anti-Pycsar_Apyc1 | 0.69 | 47.0 | 2.94e-01 | 86.8% | 13.1% |
| 4932524 | 247.1.1.30 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 | 0.69 | 47.0 | 2.93e-01 | 88.7% | 12.7% |
| 3879163 | 247.1.1.31 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_4, Anti-Pycsar_Apyc1 | 0.68 | 50.0 | 2.82e-01 | 88.7% | 6.2% |
| 5050775 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.68 | 48.0 | 3.86e-01 | 100.0% | 37.3% |
| 4460652 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.68 | 46.0 | 2.86e-01 | 86.8% | 12.5% |
| 4068562 | 247.1.1.29 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2, Anti-Pycsar_Apyc1 | 0.67 | 45.0 | 2.82e-01 | 88.7% | 12.5% |
| None | — | 0.66 | 45.0 | 2.82e-01 | 88.7% | 12.3% | |
| 4252853 | 247.1.1.29 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2, Anti-Pycsar_Apyc1 | 0.66 | 45.0 | 2.83e-01 | 88.7% | 12.7% |
| 4982811 | 247.1.1.30 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 | 0.66 | 44.0 | 2.75e-01 | 88.7% | 11.9% |
| 5037297 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.66 | 45.0 | 3.00e-01 | 88.7% | 17.3% |
| 3590468 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 55.0 | 5.03e-01 | 100.0% | 71.4% |
| 5025086 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.65 | 58.0 | 5.77e-01 | 100.0% | 96.4% |
| None | — | 0.65 | 44.0 | 2.75e-01 | 88.7% | 12.1% | |
| 3404255 | 379.1.1.1 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 | 0.65 | 43.0 | 4.40e-01 | 100.0% | 74.0% |
| 4026342 | 247.1.1.31 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_4, Anti-Pycsar_Apyc1 | 0.64 | 44.0 | 2.48e-01 | 88.7% | 5.8% |
| 3252861 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.63 | 45.0 | 3.06e-01 | 100.0% | 19.1% |
| 3267853 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.63 | 45.0 | 3.04e-01 | 100.0% | 18.6% |
| 3907235 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.63 | 45.0 | 3.01e-01 | 100.0% | 18.2% |
| 3875549 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.63 | 45.0 | 3.10e-01 | 100.0% | 21.0% |
| 3258276 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.62 | 45.0 | 3.00e-01 | 100.0% | 18.2% |
| 1779574 | 4012.1.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase | 0.62 | 47.0 | 5.03e-01 | 100.0% | 95.7% |
| 3303628 | 822.1.1.3 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_ATXR3 | 0.62 | 43.0 | 4.38e-01 | 100.0% | 78.0% |
| 3495764 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.62 | 44.0 | 3.10e-01 | 100.0% | 22.2% |
| 3962617 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.62 | 46.0 | 3.10e-01 | 100.0% | 20.5% |
| 4331897 | 235.1.1.41 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › TraH_2 | 0.62 | 42.0 | 3.13e-01 | 100.0% | 26.0% |
| 3353030 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.59 | 40.0 | 3.31e-01 | 100.0% | 38.0% |
| 3389539 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.58 | 39.0 | 4.13e-01 | 100.0% | 84.4% |
| 3308182 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.58 | 40.0 | 3.47e-01 | 100.0% | 43.3% |
| 9934 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.58 | 50.0 | 3.74e-01 | 100.0% | 65.9% |
| 4933017 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.57 | 45.0 | 2.86e-01 | 88.7% | 29.1% |
| 3959955 | 304.163.1.3 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 | 0.56 | 39.0 | 4.07e-01 | 100.0% | 91.1% |
| 4406921 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 39.0 | 3.48e-01 | 84.9% | 87.1% |
| 3225707 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.53 | 40.0 | 3.85e-01 | 100.0% | 71.4% |
| 4564280 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 35.0 | 2.48e-01 | 73.6% | 80.0% |
| 3929515 | 382.1.1.21 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF28966 | 0.52 | 43.0 | 3.58e-01 | 100.0% | 62.9% |
| 4173742 | 304.117.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC | 0.51 | 42.0 | 3.86e-01 | 100.0% | 92.0% |
| 3510040 | 3115.3.1.2 ↗ | a+b two layers › GP2-like › P56 › P56 › DUF2922 | 0.51 | 43.0 | 3.83e-01 | 100.0% | 71.2% |